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MT498043.1__QPK40211.1__SEA_JINKIES_80__00080
Bact-VirMT498043.1__QPK40211.1__SEA_JINKIES_80__00080
Identity
- Accession:
- MT498043 ↗
- Kingdom:
- phage
Quality
64.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Berryhillviridae›
Jinkiesvirus›
Arthrobacter_phage_Jinkies
TaxID: 2743903
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-55
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qtqA02 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.69 | 60.0 | 5.04e-01 | 100.0% | 84.4% |
| 2mhjA00 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.69 | 60.0 | 4.96e-01 | 100.0% | 73.7% |
| 1zpsA01 | 3.10.20.810 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphoribosyl-AMP cyclohydrolase | 0.66 | 56.0 | 4.67e-01 | 100.0% | 75.8% |
| 2v5nA02 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.62 | 39.0 | 2.83e-01 | 100.0% | 23.7% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.62 | 47.0 | 4.67e-01 | 100.0% | 80.4% |
| 2qgqA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 37.0 | 3.55e-01 | 100.0% | 51.7% |
| 5uayA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.58 | 48.0 | 4.24e-01 | 100.0% | 96.4% |
| 5uayA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.58 | 49.0 | 4.26e-01 | 100.0% | 84.1% |
| 1na6A01 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.57 | 48.0 | 3.42e-01 | 100.0% | 42.7% |
| 3vb0A02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 45.0 | 3.21e-01 | 90.2% | 28.1% |
| 3q6bA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.56 | 46.0 | 4.23e-01 | 100.0% | 93.2% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.56 | 45.0 | 4.12e-01 | 100.0% | 98.7% |
| 2qdfA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.56 | 45.0 | 4.02e-01 | 100.0% | 92.8% |
| 1x99A00 | 2.60.270.20 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin | 0.54 | 43.0 | 3.32e-01 | 100.0% | 95.9% |
| 3f8uB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 45.0 | 3.49e-01 | 100.0% | 75.8% |
| 6s2vC02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 39.0 | 2.93e-01 | 88.2% | 78.6% |
| 3oajA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 44.0 | 3.23e-01 | 100.0% | 77.8% |
| 6bu2A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 40.0 | 2.99e-01 | 92.2% | 88.0% |
| 4j8tA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 42.0 | 3.29e-01 | 100.0% | 70.3% |
| 2rbbA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 38.0 | 3.02e-01 | 88.2% | 74.4% |
| 4tvcA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.50 | 38.0 | 2.74e-01 | 90.2% | 48.9% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4114498 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.71 | 61.0 | 5.04e-01 | 100.0% | 80.0% |
| None | — | 0.70 | 61.0 | 4.85e-01 | 100.0% | 73.3% | |
| 4267250 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.69 | 59.0 | 4.39e-01 | 100.0% | 54.3% |
| 4947785 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.63 | 53.0 | 4.88e-01 | 100.0% | 81.2% |
| 3991047 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.63 | 51.0 | 4.26e-01 | 100.0% | 93.3% |
| 4140146 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.63 | 56.0 | 3.59e-01 | 100.0% | 27.2% |
| 3600888 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.63 | 53.0 | 3.64e-01 | 100.0% | 75.4% |
| 4187820 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.62 | 55.0 | 3.47e-01 | 98.0% | 25.5% |
| 4424090 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 39.0 | 3.46e-01 | 100.0% | 44.0% |
| 4350989 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.61 | 54.0 | 3.42e-01 | 100.0% | 26.0% |
| 4966140 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.61 | 50.0 | 4.24e-01 | 100.0% | 57.9% |
| 3475256 | 221.17.1.1 ↗ | a+b two layers › beta-Grasp › C-terminal wheel domain of Cns1 › C-terminal wheel domain of Cns1 › Wheel | 0.61 | 52.0 | 3.71e-01 | 100.0% | 59.1% |
| 3175516 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.60 | 51.0 | 4.19e-01 | 100.0% | 55.0% |
| 3784741 | 247.1.1.9 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DRMBL | 0.60 | 46.0 | 2.93e-01 | 90.2% | 52.4% |
| 4294175 | 4.6.1.5 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M | 0.60 | 53.0 | 4.41e-01 | 100.0% | 81.1% |
| 3180421 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.60 | 50.0 | 4.64e-01 | 100.0% | 78.6% |
| 4498774 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 36.0 | 3.38e-01 | 100.0% | 46.2% |
| 4289266 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.60 | 36.0 | 3.24e-01 | 100.0% | 40.0% |
| 3603774 | 239.5.1.1 ↗ | beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae | 0.60 | 50.0 | 4.27e-01 | 100.0% | 71.1% |
| 5049818 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.59 | 49.0 | 4.13e-01 | 100.0% | 57.9% |
| 4940104 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.59 | 49.0 | 4.06e-01 | 100.0% | 54.0% |
| 4490822 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.58 | 35.0 | 3.30e-01 | 100.0% | 46.2% |
| 3283031 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.57 | 46.0 | 3.92e-01 | 100.0% | 56.8% |
| 3289363 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.56 | 46.0 | 4.47e-01 | 100.0% | 86.7% |
| 3514864 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.56 | 43.0 | 4.23e-01 | 98.0% | 78.2% |
| 3647740 | 2.1.1.69 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI2 | 0.55 | 43.0 | 3.04e-01 | 100.0% | 28.7% |
| 3574934 | 59.1.2.1 ↗ | beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC | 0.55 | 47.0 | 3.59e-01 | 100.0% | 67.2% |
| None | — | 0.54 | 36.0 | 2.40e-01 | 72.5% | 34.3% | |
| 1930 | 11.8.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like › FB_lectin | 0.54 | 43.0 | 3.32e-01 | 100.0% | 95.9% |
| 3329704 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.54 | 46.0 | 3.75e-01 | 100.0% | 61.0% |
| 3722890 | 59.1.2.1 ↗ | beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC | 0.53 | 43.0 | 3.37e-01 | 100.0% | 69.8% |
| 5064476 | 211.1.1.7 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 | 0.52 | 40.0 | 3.12e-01 | 92.2% | 92.6% |
| 4241371 | 211.1.1.7 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 | 0.51 | 40.0 | 3.06e-01 | 92.2% | 91.4% |
| 3692767 | 221.2.1.0 ↗ | a+b two layers › beta-Grasp › IF3-N › IF3-N | 0.51 | 40.0 | 3.59e-01 | 100.0% | 60.0% |
| 3288258 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.51 | 37.0 | 2.92e-01 | 90.2% | 33.1% |
| 4348495 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.51 | 39.0 | 2.65e-01 | 92.2% | 86.6% |