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MT498055.1__QKY79813.1__SEA_BUMBLE_47__00047

Bact-Vir

MT498055.1__QKY79813.1__SEA_BUMBLE_47__00047

Identity

Accession:
MT498055 ↗
Kingdom:
phage

Quality

42.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Berryhillviridae› Altadenavirus› Arthrobacter_phage_Bumble

TaxID: 2743904

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 60-140
PDB
Domain cluster: rep: NC_049900.1__YP_009907750.1__H2675_gp17__00017__D1-74
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 54.0 6.04e-01 70.4% 100.0%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 52.0 5.17e-01 71.6% 84.9%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.99e-01 74.1% 96.8%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.75e-01 75.3% 88.2%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 53.0 5.63e-01 74.1% 94.4%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 51.0 5.62e-01 80.2% 90.9%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 51.0 5.36e-01 75.3% 98.6%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 5.46e-01 75.3% 95.8%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 50.0 4.96e-01 72.8% 86.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 5.30e-01 76.5% 90.9%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.70 54.0 4.56e-01 81.5% 94.7%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.68 46.0 3.91e-01 70.4% 65.9%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 31.0 2.74e-01 71.6% 33.9%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.65 47.0 4.18e-01 79.0% 52.1%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 4.10e-01 80.2% 84.6%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 4.43e-01 80.2% 80.0%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.63 47.0 3.23e-01 81.5% 33.2%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 44.0 4.35e-01 75.3% 88.4%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.60 45.0 4.41e-01 84.0% 92.5%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.60 41.0 3.49e-01 71.6% 63.3%
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 40.0 3.57e-01 70.4% 93.3%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.58 40.0 3.34e-01 71.6% 63.9%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.57 41.0 3.06e-01 76.5% 53.4%
3dxvA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 43.0 3.52e-01 84.0% 67.8%
2opiA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.55 48.0 3.65e-01 98.8% 94.6%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.55 45.0 4.00e-01 91.4% 89.9%
6torA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 45.0 3.83e-01 96.3% 77.1%
6fyqA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 45.0 3.55e-01 93.8% 64.8%
3l44A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 44.0 3.44e-01 92.6% 60.7%
3a8uX01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 44.0 3.59e-01 93.8% 61.9%
6efaA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 36.0 3.69e-01 71.6% 80.8%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.58e-01 85.2% 100.0%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 39.0 3.32e-01 84.0% 95.9%
2fk5A00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.52 44.0 3.38e-01 96.3% 96.9%
4emyA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 43.0 3.35e-01 90.1% 52.4%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3501574 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.86 58.0 6.10e-01 70.4% 100.0%
3185914 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.83 70.0 5.90e-01 90.1% 96.2%
3556321 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.82 59.0 5.96e-01 74.1% 97.5%
3326132 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 54.0 6.01e-01 71.6% 86.2%
3304602 4.1.1.427 ↗ beta barrels › SH3 › SH3 › SH3 › F-box 0.79 54.0 5.13e-01 70.4% 61.1%
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 54.0 5.07e-01 70.4% 63.2%
4024913 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 53.0 5.82e-01 81.5% 87.7%
3706786 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 60.0 6.23e-01 81.5% 100.0%
1289661 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.77 52.0 5.70e-01 70.4% 86.6%
3993250 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.77 50.0 5.96e-01 70.4% 98.2%
3785385 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 54.0 5.23e-01 79.0% 65.6%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.77 53.0 6.02e-01 75.3% 96.7%
4165723 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.76 57.0 6.34e-01 86.4% 98.5%
3479350 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 54.0 5.31e-01 72.8% 85.9%
4218142 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.75 58.0 5.36e-01 80.2% 65.0%
4266110 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.75 52.0 5.55e-01 71.6% 91.4%
3649741 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.75 53.0 5.55e-01 75.3% 80.0%
3868320 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.74 49.0 5.43e-01 70.4% 84.6%
3708055 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.74 54.0 5.94e-01 76.5% 100.0%
3601162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 54.0 5.94e-01 76.5% 100.0%
3569289 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.74 56.0 5.69e-01 79.0% 100.0%
3502290 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 51.0 5.80e-01 71.6% 100.0%
3230113 4.1.1.315 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.73 64.0 4.05e-01 95.1% 51.4%
3899828 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 50.0 5.09e-01 71.6% 88.7%
4953054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 55.0 5.73e-01 82.7% 97.3%
2831843 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 53.0 4.80e-01 76.5% 72.1%
1032191 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.72 50.0 5.20e-01 72.8% 98.7%
3372822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 56.0 5.84e-01 82.7% 98.7%
3415045 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 49.0 5.24e-01 71.6% 98.6%
5001903 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.89e-01 84.0% 100.0%
3373330 4.1.1.337 ↗ beta barrels › SH3 › SH3 › SH3 › CSD_RNase_II 0.71 53.0 5.50e-01 77.8% 88.0%
3290899 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 54.0 5.75e-01 81.5% 100.0%
3308604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 57.0 5.88e-01 87.7% 100.0%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 56.0 5.82e-01 86.4% 100.0%
3263031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 48.0 5.24e-01 70.4% 93.8%
4139090 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.69 46.0 5.37e-01 70.4% 100.0%
3494765 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.69 48.0 3.48e-01 71.6% 32.3%
3354076 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.69 58.0 4.85e-01 88.9% 66.2%
3608770 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.69 54.0 4.29e-01 82.7% 44.5%
3413864 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 47.0 3.69e-01 71.6% 63.0%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.68 62.0 4.47e-01 98.8% 51.0%
3443078 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.67 57.0 4.40e-01 91.4% 44.0%
3574613 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 48.0 4.47e-01 74.1% 76.0%
4134876 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.67 53.0 4.20e-01 86.4% 81.8%
3518475 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.35e-01 81.5% 100.0%
2561577 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.64 46.0 5.08e-01 82.7% 100.0%
4327595 4.1.1.402 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2761 0.60 42.0 4.04e-01 72.8% 73.7%
D2 high residues 495-546
PDB
D3 medium residues 222-318
PDB
D4 medium residues 389-477
PDB