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MT500539.1__QLF85291.1__STSR3_07__00007

Bact-Vir

MT500539.1__QLF85291.1__STSR3_07__00007

Identity

Accession:
MT500539 ↗
Kingdom:
phage

Quality

54.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Salmonella_virus_STSR3

TaxID: 2743845

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-163
PDB
Domain cluster: rep: NC_047887.1__YP_009795317.1__HOS40_gp059__00110__D440-564
D2 high residues 426-512
PDB
D3 medium residues 173-270
PDB
Domain cluster: rep: NC_074755.1__YP_010774351.1__QJS28_gp38__00038__D369-473_584-611
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13550.14 best Phage-tail_3 38.6 1.50e-09 98.0% 60.1%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cddB03 3.30.1920.10 Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › Baseplate protein-like domains - 2 layer sandwich fold 0.84 50.0 6.35e-01 71.4% 100.0%
1wruA03 3.30.1920.10 Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › Baseplate protein-like domains - 2 layer sandwich fold 0.81 47.0 6.01e-01 70.4% 100.0%
3t38A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 38.0 3.48e-01 71.4% 98.4%
4pg4A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 37.0 3.20e-01 70.4% 96.9%
1sz2B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 34.0 3.24e-01 70.4% 98.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3573688 3071.1.1.6 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Phage-tail_3 0.96 67.0 7.49e-01 71.4% 87.5%
3964699 3071.1.1.6 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Phage-tail_3 0.90 62.0 7.30e-01 70.4% 100.0%
4957567 3071.1.1.0 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.77 53.0 6.13e-01 70.4% 100.0%
4534874 3071.1.1.1 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Phage_GPD 0.75 52.0 6.00e-01 72.4% 98.6%
4929759 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 68.0 5.73e-01 100.0% 67.5%
5039500 323.1.1.1 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh 0.52 36.0 2.53e-01 71.4% 35.5%
3982054 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.50 35.0 2.88e-01 71.4% 91.1%
D4 medium residues 271-412
PDB
Domain cluster: rep: KJ534580.1__AHX01182.1__M316_0117__00117__D554-561_649-693_720-800
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 43.0 3.02e-01 91.5% 25.4%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 32.0 3.92e-01 90.1% 88.5%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 42.0 4.35e-01 97.2% 82.4%
2x1wO01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 33.0 3.96e-01 89.4% 87.4%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.56 43.0 3.69e-01 81.0% 90.4%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.53 38.0 4.25e-01 75.4% 100.0%
4h8wC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 27.0 3.54e-01 87.3% 93.3%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 32.0 3.60e-01 90.8% 86.5%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4125814 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.75 40.0 5.45e-01 90.8% 100.0%
4319764 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 43.0 4.79e-01 92.3% 73.6%
3967745 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 40.0 5.27e-01 90.8% 100.0%
4402716 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 41.0 5.23e-01 91.5% 92.9%
1790393 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 42.0 5.34e-01 90.1% 97.6%
3387360 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 40.0 5.07e-01 90.1% 90.6%
4890345 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.68 41.0 5.11e-01 88.7% 98.8%
4883586 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 40.0 4.98e-01 80.3% 100.0%
3265105 11.1.1.802 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.63 37.0 4.43e-01 87.3% 86.3%
4960956 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.56 36.0 3.47e-01 96.5% 56.9%
4010630 2004.1.1.10 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.53 43.0 3.02e-01 89.4% 28.1%