Back to structures

MT521992.1__QLF83303.1__SEA_NICEHOUSE_59__00059

Bact-Vir

MT521992.1__QLF83303.1__SEA_NICEHOUSE_59__00059

Identity

Accession:
MT521992 ↗
Kingdom:
phage

Quality

68.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-176
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF04586.23 best Peptidase_S78 23.5 7.70e-05 98.6% 38.8%
PF14550.12 Peptidase_S78_2 24.7 3.10e-05 70.5% 78.0%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 42.0 4.81e-01 100.0% 80.4%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 41.0 4.91e-01 100.0% 85.1%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 42.0 4.82e-01 100.0% 82.1%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 41.0 4.85e-01 100.0% 85.3%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 39.0 4.84e-01 100.0% 91.0%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 39.0 4.69e-01 100.0% 85.9%
3c19A01 3.30.70.1380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like 0.64 39.0 4.67e-01 100.0% 89.9%
2joqA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 34.0 4.41e-01 96.6% 97.3%
2nzcB00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.63 35.0 4.44e-01 100.0% 95.1%
1y7pB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 34.0 4.41e-01 97.9% 95.0%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 37.0 4.54e-01 100.0% 94.4%
8cwoF01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.62 39.0 4.67e-01 96.6% 98.9%
1vmbA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.62 42.0 4.77e-01 100.0% 93.5%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 35.0 4.37e-01 98.6% 96.4%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 36.0 4.49e-01 100.0% 95.5%
1j27A00 3.30.70.1120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like 0.61 38.0 4.49e-01 100.0% 92.9%
2ypyA00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.60 38.0 3.96e-01 98.6% 67.9%
3nrbB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 34.0 4.38e-01 98.6% 98.8%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 37.0 4.51e-01 98.6% 97.8%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.60 36.0 4.28e-01 100.0% 90.6%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.59 40.0 3.95e-01 100.0% 63.8%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 34.0 4.23e-01 98.6% 93.3%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 36.0 4.33e-01 98.6% 96.7%
3ue2A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 35.0 4.30e-01 97.3% 98.9%
2pgcC01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 38.0 4.54e-01 97.3% 100.0%
2yq1C00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.58 36.0 3.80e-01 98.6% 68.7%
4i6yA02 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.57 41.0 4.65e-01 97.9% 100.0%
3lvtA03 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 39.0 4.17e-01 91.1% 79.1%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.57 32.0 3.72e-01 84.9% 76.7%
5d79A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.55 33.0 3.06e-01 97.3% 44.4%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 37.0 4.29e-01 100.0% 99.0%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 39.0 4.39e-01 99.3% 99.1%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.53 43.0 4.33e-01 97.9% 86.7%
1vs3A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.53 48.0 4.86e-01 100.0% 100.0%
3qjlA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 4.37e-01 99.3% 97.5%
4gafB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 32.0 3.58e-01 96.6% 77.3%
2ftrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 35.0 4.06e-01 99.3% 96.1%
3vteA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.52 32.0 2.98e-01 97.3% 45.9%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 32.0 3.56e-01 96.6% 78.0%
2ogkD00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.52 41.0 4.18e-01 100.0% 86.6%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 28.0 3.48e-01 87.7% 91.0%
4of8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 30.0 3.47e-01 88.4% 78.6%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.51 29.0 3.68e-01 92.5% 98.8%
1qf6A02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.51 30.0 3.47e-01 91.8% 79.2%
5a2fA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 32.0 3.58e-01 97.9% 81.2%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 31.0 3.21e-01 91.8% 61.3%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.50 34.0 3.79e-01 100.0% 87.0%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964948 1.1.16.4 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Peptidase_S78 0.93 76.0 8.26e-01 95.2% 97.6%
3954964 50.1.1.3 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 0.86 80.0 8.10e-01 97.9% 97.2%
5039158 50.1.1.3 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 0.85 75.0 7.27e-01 92.5% 94.4%
4929754 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.80 68.0 7.23e-01 94.5% 99.2%
3945940 50.1.1.3 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 0.79 69.0 6.94e-01 90.4% 91.7%
3585229 50.1.1.2 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 0.79 73.0 7.46e-01 95.9% 100.0%
4032431 50.1.1.3 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 0.79 68.0 6.70e-01 90.4% 87.1%
3945977 50.1.1.4 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 0.78 72.0 6.91e-01 97.3% 97.6%
3946833 1.1.16.2 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Phage_GPO 0.74 65.0 6.75e-01 95.9% 100.0%
4969104 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.68 41.0 5.09e-01 98.6% 100.0%
4945049 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.67 36.0 4.36e-01 98.6% 78.9%
5054484 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.65 33.0 4.44e-01 97.9% 97.1%
3696589 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.65 37.0 4.25e-01 96.6% 73.6%
4638999 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.64 35.0 4.48e-01 98.6% 95.0%
3624100 304.55.1.0 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains 0.64 33.0 4.10e-01 96.6% 82.4%
3604508 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.63 35.0 4.33e-01 98.6% 87.8%
3504328 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 35.0 4.45e-01 97.9% 97.5%
3903912 304.8.1.15 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › TH_ACT 0.62 36.0 4.11e-01 99.3% 74.5%
3974775 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.62 36.0 4.37e-01 97.3% 88.4%
4060458 304.8.1.22 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.62 35.0 4.37e-01 97.9% 97.5%
4243267 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.62 36.0 3.05e-01 98.6% 33.2%
4956189 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.61 34.0 4.46e-01 96.6% 98.8%
4400919 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.61 33.0 4.36e-01 95.2% 100.0%
3970088 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 37.0 4.39e-01 99.3% 91.6%
3661686 304.114.1.2 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N 0.60 42.0 4.82e-01 97.3% 100.0%
5024124 304.15.1.0 a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.60 32.0 4.20e-01 99.3% 95.0%
5035109 304.102.1.2 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.59 35.0 3.09e-01 93.8% 39.0%
3495445 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.59 36.0 2.70e-01 97.9% 22.9%
4020396 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.59 36.0 4.39e-01 78.8% 97.8%
3245334 229.1.1.1 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.58 32.0 3.40e-01 100.0% 59.2%
3465961 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.58 45.0 3.96e-01 100.0% 54.6%
3917081 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 34.0 3.96e-01 98.6% 82.0%
1130316 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 34.0 4.19e-01 98.6% 92.3%
3702886 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.58 36.0 3.04e-01 95.9% 36.0%
1122231 304.15.1.4 a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain › LANA1_DNA-bd 0.58 36.0 3.80e-01 98.6% 68.7%
3638400 304.114.1.2 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N 0.57 41.0 4.42e-01 97.9% 86.4%
3789238 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 36.0 4.03e-01 97.9% 80.9%
4944896 304.51.1.1 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.57 46.0 4.83e-01 99.3% 97.7%
3724565 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.56 39.0 4.35e-01 97.3% 91.3%
3831736 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.56 35.0 4.02e-01 100.0% 89.0%
3510769 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 33.0 3.98e-01 99.3% 90.5%
3931456 304.42.1.1 a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.54 44.0 4.17e-01 99.3% 74.1%
3978063 304.51.1.3 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc 0.54 42.0 4.42e-01 97.3% 93.8%
3827561 304.8.1.106 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Saccharop_dh_N 0.53 35.0 4.11e-01 100.0% 98.0%
4935602 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 40.0 4.36e-01 99.3% 97.5%
4031950 304.4.1.73 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF4865 0.52 34.0 3.89e-01 99.3% 90.5%
4134590 304.4.1.11 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD 0.51 34.0 3.98e-01 100.0% 99.0%
4927441 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.51 32.0 3.83e-01 95.9% 98.9%
4974604 882.1.1.4 a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.51 40.0 4.24e-01 100.0% 98.4%
D2 high residues 263-347
PDB
Domain cluster: representative