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MT521992.1__QLF83326.1__SEA_NICEHOUSE_82__00082

Bact-Vir

MT521992.1__QLF83326.1__SEA_NICEHOUSE_82__00082

Identity

Accession:
MT521992 ↗
Kingdom:
phage

Quality

86.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Trinavirus› Rhodococcus_phage_NiceHouse

TaxID: 2743998

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-54_80-103
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.73 45.0 5.39e-01 93.6% 94.2%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 54.0 5.60e-01 84.6% 98.6%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.68 43.0 4.96e-01 73.1% 89.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 5.04e-01 94.9% 80.8%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 5.39e-01 100.0% 100.0%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.83e-01 97.4% 80.3%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 52.0 4.84e-01 92.3% 90.6%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 47.0 4.80e-01 89.7% 84.0%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 49.0 4.87e-01 100.0% 85.2%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 44.0 4.41e-01 92.3% 77.2%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 51.0 5.10e-01 96.2% 97.5%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 40.0 3.42e-01 73.1% 67.5%
1wu7A03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 39.0 3.68e-01 73.1% 82.5%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 4.54e-01 92.3% 92.5%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 4.65e-01 84.6% 96.8%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 45.0 4.63e-01 87.2% 98.6%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 36.0 3.10e-01 96.2% 39.1%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 47.0 4.61e-01 92.3% 86.9%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 4.36e-01 97.4% 87.5%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.51 38.0 3.32e-01 98.7% 51.7%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.51 42.0 4.03e-01 92.3% 88.9%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 39.0 4.04e-01 92.3% 89.3%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4972485 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 53.0 6.21e-01 87.2% 100.0%
4420340 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 54.0 6.00e-01 91.0% 100.0%
3562174 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 52.0 4.74e-01 74.4% 65.0%
3619215 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 53.0 4.86e-01 96.2% 62.0%
3579591 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.70 48.0 5.57e-01 94.9% 100.0%
3261235 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 55.0 5.37e-01 92.3% 76.5%
3259547 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 53.0 4.61e-01 100.0% 53.9%
4547820 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 52.0 4.67e-01 93.6% 58.1%
3525406 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.70 49.0 4.35e-01 73.1% 65.5%
4061621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 4.05e-01 94.9% 33.8%
3222146 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.69 51.0 5.51e-01 93.6% 93.8%
3580370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 54.0 4.57e-01 84.6% 69.6%
3617355 4.1.1.348 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor, SMN_YG-box 0.68 53.0 4.99e-01 91.0% 68.4%
4524466 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 50.0 5.30e-01 100.0% 87.1%
3787586 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 55.0 4.93e-01 87.2% 67.6%
3555930 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.67 51.0 5.37e-01 96.2% 90.0%
3628870 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 53.0 4.74e-01 85.9% 60.9%
3575959 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 54.0 4.76e-01 85.9% 71.8%
4470603 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.67 51.0 3.98e-01 96.2% 38.8%
3756428 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.66 52.0 4.77e-01 91.0% 65.0%
3582536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 4.29e-01 78.2% 57.4%
3917568 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 52.0 4.57e-01 84.6% 58.3%
4420173 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.66 48.0 4.97e-01 94.9% 81.3%
3504417 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 52.0 5.01e-01 85.9% 74.4%
4064354 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.65 47.0 5.23e-01 98.7% 98.3%
3409299 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.65 53.0 5.27e-01 87.2% 86.3%
3997949 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 52.0 4.96e-01 85.9% 75.6%
4026282 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 51.0 4.91e-01 88.5% 74.4%
4104915 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.64 46.0 5.08e-01 97.4% 96.7%
3885050 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.64 51.0 3.87e-01 97.4% 37.7%
4105328 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.64 48.0 5.22e-01 91.0% 95.4%
3910433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 48.0 5.25e-01 97.4% 98.5%
3609116 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.70e-01 96.2% 96.6%
3519126 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 54.0 5.36e-01 100.0% 91.3%
3486495 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.02e-01 98.7% 41.1%
3672445 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.32e-01 94.9% 96.6%
3627869 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.61 52.0 4.10e-01 92.3% 76.1%
4018667 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 45.0 3.92e-01 79.5% 60.9%
3476179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.94e-01 96.2% 92.6%
5027286 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.58 48.0 4.70e-01 89.7% 85.9%
3429053 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.58 52.0 4.01e-01 100.0% 69.5%
25836 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 44.0 4.54e-01 87.2% 91.7%
3712451 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 49.0 4.11e-01 97.4% 59.2%
3714156 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.73e-01 97.4% 87.1%
3819340 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.55 49.0 4.27e-01 100.0% 94.2%
3398023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 50.0 3.75e-01 97.4% 44.0%
3237314 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.54 45.0 4.31e-01 94.9% 77.8%
3267329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 50.0 4.22e-01 100.0% 97.6%
4002679 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.54 47.0 4.05e-01 94.9% 95.8%
3235763 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.53 44.0 4.38e-01 94.9% 88.7%
D2 medium residues 55-79_104-144
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rc3A02 1.20.272.40 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.60 43.0 3.97e-01 84.8% 58.6%
1wxpA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.59 46.0 4.35e-01 100.0% 69.0%
1vpwA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 33.0 3.60e-01 90.9% 70.2%
4pt1B00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.55 41.0 3.39e-01 83.3% 90.6%
2of5H00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.54 43.0 3.84e-01 90.9% 59.0%
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 46.0 3.24e-01 98.5% 61.7%
5v89A02 1.10.238.200 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Cullin, PONY binding domain 0.52 38.0 3.35e-01 78.8% 86.3%
3ezqA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.51 42.0 3.65e-01 100.0% 59.1%
3llkA02 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.51 39.0 3.08e-01 83.3% 82.5%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.51 35.0 3.68e-01 97.0% 80.3%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028162 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.71 47.0 5.20e-01 89.4% 92.0%
3288293 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.62 35.0 3.89e-01 90.9% 69.1%
4993912 102.1.1.11 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 0.57 39.0 3.90e-01 87.9% 68.6%
3943441 101.1.4.2 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.57 34.0 3.89e-01 90.9% 80.0%
4966635 4095.1.1.0 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain 0.56 45.0 3.40e-01 92.4% 57.1%
4037022 604.15.1.1 ↗ alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like › efb-c 0.52 34.0 3.68e-01 87.9% 81.8%
4951306 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.52 44.0 2.68e-01 92.4% 19.3%
4441814 604.15.1.0 ↗ alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.51 33.0 3.57e-01 74.2% 81.8%