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MT521997.1__QLF84011.1__SEA_UPYO_32__00032

Bact-Vir

MT521997.1__QLF84011.1__SEA_UPYO_32__00032

Identity

Accession:
MT521997 ↗
Kingdom:
phage

Quality

65.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 157-217
PDB
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jeuA02 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.65 42.0 3.56e-01 72.1% 39.6%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 53.0 4.56e-01 91.8% 60.6%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 44.0 4.18e-01 83.6% 62.7%
5yh4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 51.0 3.76e-01 96.7% 91.1%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.61 53.0 3.79e-01 100.0% 36.2%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 50.0 4.12e-01 91.8% 56.6%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 42.0 3.97e-01 100.0% 59.5%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.61 53.0 4.07e-01 100.0% 82.9%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 53.0 3.38e-01 100.0% 20.1%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.61 46.0 3.53e-01 83.6% 51.7%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 45.0 3.64e-01 83.6% 43.0%
2mctA00 2.60.40.4250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 41.0 3.53e-01 90.2% 43.1%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 3.73e-01 100.0% 48.5%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.59 49.0 4.51e-01 93.4% 96.2%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.22e-01 100.0% 76.9%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 4.00e-01 98.4% 71.1%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.58 49.0 4.26e-01 100.0% 76.2%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 48.0 3.84e-01 93.4% 61.1%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.58 43.0 3.73e-01 83.6% 63.7%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 49.0 4.36e-01 98.4% 81.5%
1h9oA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 47.0 3.92e-01 91.8% 59.3%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 46.0 4.08e-01 91.8% 68.1%
2eobA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 46.0 3.82e-01 91.8% 52.2%
1m1hA02 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.57 44.0 4.01e-01 90.2% 63.4%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 3.69e-01 100.0% 76.0%
2dx0A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 39.0 3.20e-01 82.0% 38.5%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.56 48.0 3.87e-01 98.4% 90.1%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 4.20e-01 100.0% 82.8%
8p2aA01 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.55 44.0 4.06e-01 98.4% 97.7%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.79e-01 98.4% 75.0%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.55 40.0 4.11e-01 100.0% 84.5%
4ioyX01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.54 47.0 3.75e-01 100.0% 86.7%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.66e-01 100.0% 63.6%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.93e-01 100.0% 79.6%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.20e-01 86.9% 52.3%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.83e-01 98.4% 90.5%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.73e-01 100.0% 82.1%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.53 36.0 3.06e-01 100.0% 41.7%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.53 45.0 3.54e-01 96.7% 62.4%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.68e-01 100.0% 78.8%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.53 31.0 3.19e-01 88.5% 57.4%
5u78C00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.66e-01 98.4% 86.2%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.84e-01 98.4% 79.2%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 4.07e-01 100.0% 83.0%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.76e-01 98.4% 75.5%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.45e-01 100.0% 63.8%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.70e-01 98.4% 75.7%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.80e-01 100.0% 88.9%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.74e-01 100.0% 83.5%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.53e-01 98.4% 70.7%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 40.0 3.91e-01 90.2% 80.6%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.51 44.0 3.56e-01 96.7% 63.9%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.63e-01 98.4% 73.4%
6w9rB01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 41.0 3.05e-01 100.0% 34.0%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.58e-01 98.4% 70.4%
2wxwA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 41.0 3.15e-01 100.0% 36.7%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 41.0 3.49e-01 98.4% 85.3%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3887656 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 53.0 4.24e-01 91.8% 62.3%
3932677 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.66 48.0 3.68e-01 100.0% 32.9%
3230955 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 51.0 3.37e-01 100.0% 20.4%
262552 52.1.1.1 beta sandwiches › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › PPV_E2_N 0.65 40.0 3.47e-01 72.1% 38.4%
4940356 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.65 55.0 3.99e-01 100.0% 33.7%
3244743 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 49.0 3.79e-01 100.0% 34.7%
1581082 52.1.1.1 beta sandwiches › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › PPV_E2_N 0.64 41.0 3.50e-01 70.5% 39.2%
5030272 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 54.0 3.96e-01 100.0% 42.2%
3164898 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.61 46.0 4.04e-01 98.4% 53.7%
3550970 719.1.1.5 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.61 50.0 4.10e-01 90.2% 66.4%
3252094 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 51.0 4.29e-01 100.0% 70.4%
4044230 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.61 50.0 3.61e-01 93.4% 49.4%
1117595 3784.1.1.2 a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › DUF5301 0.60 41.0 3.53e-01 90.2% 43.1%
3788126 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.60 47.0 4.01e-01 91.8% 51.4%
4207636 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.57 49.0 4.17e-01 100.0% 73.3%
3249381 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 3.64e-01 98.4% 68.5%
5082246 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 39.0 3.92e-01 70.5% 71.7%
3719371 101.1.12.0 alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.57 46.0 3.67e-01 90.2% 62.4%
3612141 719.1.1.5 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.57 46.0 3.55e-01 90.2% 57.2%
5011877 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.56 49.0 4.35e-01 100.0% 93.3%
3217858 220.1.1.37 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.56 47.0 3.41e-01 100.0% 57.4%
3410022 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.56 47.0 3.47e-01 100.0% 46.9%
3916753 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 43.0 3.28e-01 88.5% 50.6%
3260374 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.55 46.0 4.11e-01 98.4% 84.9%
4572131 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.55 42.0 2.94e-01 90.2% 37.6%
3414375 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.70e-01 98.4% 68.0%
5033243 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.55 44.0 4.12e-01 91.8% 98.8%
3482289 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.69e-01 98.4% 87.2%
3263932 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 45.0 3.59e-01 100.0% 64.3%
140426 71.1.1.6 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LppX_LprAFG 0.54 45.0 3.13e-01 93.4% 65.0%
3497653 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 3.68e-01 100.0% 87.7%
1088864 9.1.1.15 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF2147 0.54 44.0 3.50e-01 100.0% 77.6%
3912099 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 45.0 3.87e-01 100.0% 78.1%
3267948 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 44.0 2.45e-01 98.4% 7.9%
4027577 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 3.66e-01 100.0% 79.2%
3719720 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.53 44.0 2.72e-01 100.0% 17.1%
3478666 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 44.0 3.82e-01 100.0% 78.1%
3929366 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.53 45.0 3.85e-01 100.0% 72.4%
3502336 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 3.87e-01 100.0% 81.0%
3255028 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 44.0 3.32e-01 100.0% 56.5%
3260650 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 44.0 3.73e-01 100.0% 73.6%
3467267 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.52 43.0 4.26e-01 100.0% 89.2%
3781329 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 39.0 3.66e-01 98.4% 63.7%
4637164 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 43.0 3.41e-01 98.4% 55.9%
4586498 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 44.0 3.54e-01 100.0% 65.4%
3249359 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 43.0 3.58e-01 100.0% 68.8%
953 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 43.0 3.84e-01 98.4% 85.3%
3511457 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 43.0 3.48e-01 100.0% 77.0%
3178227 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 43.0 2.79e-01 100.0% 50.6%
4467867 3784.1.1.0 a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.52 45.0 3.47e-01 100.0% 55.9%
3405634 10.1.1.1 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.51 43.0 3.18e-01 100.0% 52.2%
3173368 220.1.1.244 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31261 0.51 42.0 3.37e-01 98.4% 67.1%
3937459 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.76e-01 100.0% 90.0%
4259069 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 2.76e-01 96.7% 25.5%
3392305 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.63e-01 100.0% 83.6%
3859895 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.51 42.0 2.67e-01 100.0% 22.1%
4434185 3804.1.1.1 alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › Cas13a_endoribonuclease 0.51 41.0 3.14e-01 96.7% 97.0%
3961274 3794.1.1.2 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.50 41.0 3.29e-01 93.4% 61.5%
3810686 4.8.1.7 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SAWADEE 0.50 42.0 3.95e-01 98.4% 85.0%
D2 medium residues 79-135
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zbqA00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.67 50.0 3.12e-01 80.7% 19.4%