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MT521997.1__QLF84034.1__SEA_UPYO_55__00055

Bact-Vir

MT521997.1__QLF84034.1__SEA_UPYO_55__00055

Identity

Accession:
MT521997 ↗
Kingdom:
phage

Quality

69.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Trinevirus› Gordonia_phage_Upyo

TaxID: 2743989

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-74
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 44.0 3.83e-01 72.6% 42.9%
3lapA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 45.0 4.62e-01 72.6% 73.5%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.64 45.0 3.63e-01 74.0% 38.9%
3e3rB01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 47.0 4.48e-01 76.7% 76.5%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 51.0 4.47e-01 87.7% 72.3%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 41.0 4.25e-01 75.3% 71.0%
1w9rA00 1.20.58.440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A 0.61 44.0 3.74e-01 75.3% 82.4%
1q1qA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 43.0 2.87e-01 75.3% 56.1%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 4.10e-01 75.3% 64.7%
1ylmA00 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.59 49.0 4.02e-01 95.9% 47.9%
1qdmA03 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.59 41.0 4.07e-01 82.2% 68.8%
2a6hF01 1.20.120.1810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 49.0 3.76e-01 94.5% 50.8%
4f3fC00 1.20.970.40 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › 0.59 32.0 3.56e-01 82.2% 66.1%
2nnwA02 1.10.287.4070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 49.0 4.13e-01 95.9% 88.2%
1chkA01 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.54 41.0 3.45e-01 86.3% 82.5%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 39.0 3.44e-01 79.5% 58.0%
5cqgA03 1.10.10.2210 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 38.0 3.78e-01 86.3% 78.5%
4s3mB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.50 40.0 3.64e-01 91.8% 66.0%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3211251 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 48.0 5.63e-01 72.6% 92.0%
3406651 592.7.1.1 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.75 53.0 5.30e-01 79.5% 72.0%
3420661 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.75 53.0 5.04e-01 79.5% 63.5%
4027348 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.73 52.0 5.15e-01 79.5% 72.0%
3890613 101.1.2.698 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27079 0.72 48.0 5.05e-01 74.0% 76.9%
3342850 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.72 52.0 5.23e-01 79.5% 74.7%
3983493 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.69 46.0 5.27e-01 75.3% 100.0%
3590551 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.68 45.0 5.17e-01 75.3% 100.0%
4964860 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 42.0 4.23e-01 71.2% 61.3%
3631439 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.67 49.0 4.55e-01 79.5% 60.0%
3878549 101.1.2.536 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.67 46.0 5.13e-01 78.1% 96.4%
3504540 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.66 46.0 5.12e-01 82.2% 96.4%
3887965 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.66 46.0 5.12e-01 78.1% 96.4%
3723417 102.1.2.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.66 57.0 3.97e-01 97.3% 66.1%
3519342 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.65 45.0 5.06e-01 82.2% 98.2%
4979726 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 42.0 4.35e-01 74.0% 70.0%
3899987 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.63 46.0 4.43e-01 83.6% 67.1%
4933483 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 44.0 4.21e-01 74.0% 64.7%
1736235 101.1.1.51 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Slx4 0.62 49.0 5.04e-01 89.0% 92.8%
3632179 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.61 44.0 4.38e-01 76.7% 78.7%
3940776 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 46.0 4.39e-01 86.3% 81.1%
3793263 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 47.0 3.05e-01 100.0% 17.3%
3282047 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.59 46.0 4.30e-01 90.4% 88.0%
2036845 3546.1.1.1 ↗ alpha arrays › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Pex14_N 0.58 40.0 4.14e-01 82.2% 75.7%
5071167 606.1.1.1 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop 0.58 47.0 3.91e-01 91.8% 77.0%
3583865 101.3.1.0 ↗ alpha arrays › HTH › XPC-binding domain › XPC-binding domain 0.56 41.0 4.12e-01 89.0% 77.3%
3984964 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.56 48.0 4.82e-01 98.6% 94.7%
3688281 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.54 44.0 3.99e-01 97.3% 67.4%
4456963 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.52 42.0 3.27e-01 94.5% 38.4%
4982068 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.51 39.0 3.20e-01 93.2% 42.1%
5013440 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.41e-01 91.8% 80.0%
3990863 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.51 44.0 3.38e-01 100.0% 41.8%
3510177 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.51 44.0 3.40e-01 98.6% 98.2%