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MT533174.1__QMP18659.1__CJ20_063__00063

Bact-Vir

MT533174.1__QMP18659.1__CJ20_063__00063

Identity

Accession:
MT533174 ↗
Kingdom:
phage

Quality

85.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-74
PDB
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c57B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 56.0 5.81e-01 92.5% 83.7%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 55.0 4.73e-01 81.1% 83.3%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 54.0 4.86e-01 94.3% 57.3%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.71 60.0 5.33e-01 100.0% 77.8%
4a18Q01 1.10.10.1760 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 0.71 54.0 5.07e-01 86.8% 71.0%
1f20A01 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.70 57.0 4.02e-01 90.6% 33.7%
2da4A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 59.0 5.62e-01 100.0% 92.4%
3fdqA01 1.20.120.1030 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain 0.69 56.0 4.35e-01 96.2% 40.2%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 59.0 4.47e-01 100.0% 79.7%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 4.89e-01 100.0% 68.6%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 46.0 3.49e-01 73.6% 29.0%
2p9xA00 1.10.1200.200 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 0.67 51.0 4.19e-01 83.0% 90.8%
8gy0A01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.67 52.0 3.29e-01 84.9% 34.9%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.66 53.0 4.94e-01 90.6% 71.0%
1vfrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.66 50.0 3.35e-01 84.9% 40.6%
2m3aA00 1.10.10.1900 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like 0.65 54.0 5.10e-01 100.0% 77.6%
2b8iA00 1.20.1280.100 Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain 0.65 55.0 4.96e-01 100.0% 75.3%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 54.0 5.06e-01 96.2% 76.1%
4fcyB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 54.0 5.15e-01 98.1% 83.1%
6vvoE02 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.63 51.0 4.23e-01 92.5% 54.5%
2khvA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.63 52.0 4.62e-01 100.0% 68.2%
8hbfB01 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.63 50.0 3.55e-01 90.6% 37.0%
4me9B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 53.0 3.75e-01 100.0% 58.6%
1dd9A03 1.20.50.20 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle 0.63 46.0 4.57e-01 84.9% 88.1%
4hkaA02 1.10.287.3810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 41.0 4.21e-01 79.2% 70.6%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.62 52.0 3.55e-01 92.5% 35.1%
2aamC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 50.0 3.17e-01 90.6% 21.0%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 51.0 4.02e-01 98.1% 100.0%
4y5jA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 51.0 3.43e-01 96.2% 22.9%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.61 45.0 3.94e-01 79.2% 70.4%
2oh3A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 45.0 3.31e-01 79.2% 87.5%
2dbgA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.61 44.0 3.57e-01 77.4% 39.8%
2jgdB02 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.61 51.0 3.20e-01 100.0% 85.4%
4g1tA03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 43.0 2.79e-01 75.5% 17.8%
5djsA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 44.0 3.27e-01 79.2% 50.3%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 46.0 4.07e-01 81.1% 59.0%
2af0A02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.59 45.0 4.00e-01 83.0% 78.8%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.59 47.0 4.10e-01 86.8% 82.7%
4u04B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 42.0 3.57e-01 75.5% 51.1%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.57 46.0 3.63e-01 100.0% 57.0%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 46.0 3.53e-01 86.8% 65.3%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 42.0 4.00e-01 77.4% 84.1%
2yn7A00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.56 39.0 2.64e-01 73.6% 25.7%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.56 46.0 3.17e-01 96.2% 48.5%
1zeeA01 1.20.58.600 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 41.0 3.18e-01 79.2% 53.4%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.55 41.0 3.27e-01 83.0% 85.2%
2vsgA02 1.10.470.10 Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 0.55 43.0 3.30e-01 98.1% 60.6%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 46.0 3.86e-01 96.2% 85.1%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.53 43.0 4.17e-01 90.6% 78.7%
1oxjA01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.52 44.0 4.26e-01 98.1% 86.9%
2zttA00 6.10.140.720 Special › Helix non-globular › Helix Hairpins › 0.51 42.0 3.83e-01 92.5% 75.3%
1x9bA00 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.51 39.0 3.95e-01 96.2% 86.8%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 41.0 3.72e-01 90.6% 82.4%
2ii2A04 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.51 41.0 3.62e-01 88.7% 68.4%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4348156 613.1.1.1 alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.83 71.0 4.64e-01 96.2% 24.0%
4930909 101.29.1.0 alpha arrays › HTH › helical bundles in heme iron utilization protein-like › helical bundles in heme iron utilization protein-like 0.81 64.0 6.33e-01 88.7% 81.8%
5025032 101.1.1.542 alpha arrays › HTH › HTH › Three-helical HTH › DUF790 0.81 64.0 6.56e-01 86.8% 90.0%
4995680 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.79 70.0 6.78e-01 100.0% 95.0%
5008115 101.1.1.542 alpha arrays › HTH › HTH › Three-helical HTH › DUF790 0.79 60.0 6.44e-01 83.0% 97.8%
4347813 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.79 65.0 6.09e-01 90.6% 73.8%
3606717 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 67.0 6.84e-01 96.2% 100.0%
3502246 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 61.0 4.75e-01 86.8% 40.0%
5036595 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.77 62.0 6.20e-01 88.7% 89.1%
4992012 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 65.0 6.27e-01 94.3% 88.3%
3310491 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 62.0 5.96e-01 92.5% 80.0%
3978848 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 63.0 5.43e-01 96.2% 58.8%
4093017 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.75 66.0 5.89e-01 100.0% 70.7%
5053497 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 65.0 6.24e-01 98.1% 90.0%
3289310 103.12.1.1 alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR 0.74 50.0 5.02e-01 71.7% 80.0%
4251816 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.74 57.0 5.34e-01 84.9% 69.2%
4436102 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 62.0 6.07e-01 100.0% 90.0%
3321732 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 63.0 5.14e-01 100.0% 54.0%
4950386 138.1.1.2 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.70 58.0 4.76e-01 94.3% 53.0%
3700101 3009.1.1.0 alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like 0.70 57.0 4.97e-01 90.6% 67.5%
4473504 304.136.1.3 a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SGIII 0.69 59.0 5.04e-01 100.0% 63.3%
4945647 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.69 56.0 4.72e-01 96.2% 56.0%
3402084 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 58.0 5.11e-01 100.0% 98.8%
147067 3276.1.1.1 alpha arrays › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › MogR_DNAbind 0.69 56.0 5.32e-01 96.2% 76.6%
3185107 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 56.0 5.17e-01 92.5% 75.7%
4615565 101.1.1.249 alpha arrays › HTH › HTH › Three-helical HTH › SGIII 0.69 58.0 5.07e-01 100.0% 67.1%
3992031 548.1.1.0 alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain 0.68 49.0 5.04e-01 77.4% 84.0%
3786987 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.67 59.0 3.51e-01 100.0% 29.1%
2056101 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.66 53.0 5.01e-01 90.6% 72.3%
4452821 101.1.2.604 alpha arrays › HTH › HTH › winged helix domain › SGIII 0.65 53.0 4.82e-01 94.3% 69.3%
4946659 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.65 54.0 4.41e-01 100.0% 50.0%
5023700 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.65 51.0 4.33e-01 90.6% 51.6%
3269226 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.64 52.0 4.81e-01 100.0% 81.3%
3189353 548.1.1.1 alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP 0.62 45.0 4.61e-01 83.0% 84.0%
3810015 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.61 38.0 3.44e-01 86.8% 44.0%
3264136 3444.1.1.0 alpha arrays › DP domain › DP domain › DP domain 0.60 45.0 3.88e-01 81.1% 52.9%
3586770 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 50.0 5.02e-01 98.1% 94.5%
3416035 104.1.1.0 alpha duplicates or obligate multimers › TFIIA, alpha-helical domain › TFIIA, alpha-helical domain › TFIIA, alpha-helical domain 0.59 48.0 4.79e-01 92.5% 94.5%
3892460 548.1.1.1 alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP 0.59 41.0 4.06e-01 84.9% 68.3%
3517909 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 4.53e-01 84.9% 98.0%
4926993 6049.1.1.0 alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.58 44.0 3.56e-01 81.1% 60.0%
3277195 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.58 49.0 4.87e-01 100.0% 98.2%
3676992 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 49.0 3.07e-01 100.0% 27.5%
3414399 5086.1.1.106 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF725 0.55 39.0 2.77e-01 79.2% 24.1%
3603633 3997.1.1.1 alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › CobN-Mg_chel 0.53 43.0 3.09e-01 100.0% 58.9%
3402327 3755.3.1.324 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 0.52 35.0 2.52e-01 79.2% 21.8%
3804487 109.27.1.0 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.52 44.0 3.96e-01 96.2% 68.0%
3930499 109.27.1.0 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.51 40.0 3.82e-01 98.1% 75.7%
3769352 109.4.1.1417 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_CCP1_N 0.50 40.0 2.52e-01 92.5% 28.6%