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MT536174.2__QKW95591.1__AXL3_53__00053
Bact-VirMT536174.2__QKW95591.1__AXL3_53__00053
Identity
- Accession:
- MT536174 ↗
- Kingdom:
- phage
Quality
91.7
mean pLDDT
Taxonomy
TaxID: 2740427
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 78-153
Domain cluster:
rep: KU958700.1__AMS01608.1__SEA_CHYMERA_49__00049__D36-110
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t9oB00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.75 | 50.0 | 4.24e-01 | 72.4% | 43.3% |
| 7powA01 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.72 | 54.0 | 4.01e-01 | 80.3% | 40.9% |
| 1iygA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.70 | 52.0 | 4.34e-01 | 92.1% | 45.1% |
| 4xxiA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.70 | 49.0 | 3.98e-01 | 73.7% | 70.1% |
| 1zu2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.69 | 56.0 | 4.44e-01 | 96.1% | 43.0% |
| 1siqA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.66 | 58.0 | 4.67e-01 | 100.0% | 61.9% |
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.65 | 56.0 | 5.19e-01 | 96.1% | 89.6% |
| 4rm7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.65 | 57.0 | 4.69e-01 | 98.7% | 71.9% |
| 2pusA04 | 6.10.140.300 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 49.0 | 4.36e-01 | 93.4% | 60.2% |
| 5n17A01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.62 | 51.0 | 4.63e-01 | 96.1% | 66.3% |
| 3snhA02 | 1.20.120.1240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Dynamin, middle domain | 0.61 | 43.0 | 3.16e-01 | 75.0% | 49.5% |
| 5ojcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 44.0 | 3.56e-01 | 77.6% | 81.8% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.59 | 48.0 | 4.23e-01 | 90.8% | 77.6% |
| 1a00B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 41.0 | 3.35e-01 | 72.4% | 80.1% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 41.0 | 3.42e-01 | 75.0% | 79.4% |
| 2di3B02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.58 | 53.0 | 4.13e-01 | 100.0% | 74.2% |
| 2lqgA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.58 | 49.0 | 4.15e-01 | 100.0% | 72.5% |
| 5xfaA04 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.56 | 41.0 | 3.96e-01 | 86.8% | 68.2% |
| 1rz4A01 | 1.25.40.250 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1 | 0.55 | 41.0 | 3.56e-01 | 78.9% | 57.5% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 40.0 | 3.37e-01 | 77.6% | 81.4% |
| 4c9bB00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 43.0 | 3.05e-01 | 90.8% | 93.1% |
| 2nrlA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 45.0 | 3.71e-01 | 92.1% | 83.4% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.54 | 37.0 | 3.73e-01 | 92.1% | 70.7% |
| 1urvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 46.0 | 3.73e-01 | 97.4% | 64.3% |
| 1f5oA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 46.0 | 3.75e-01 | 97.4% | 66.4% |
| 3c02A00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.53 | 42.0 | 3.12e-01 | 93.4% | 72.7% |
| 3ckyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.53 | 44.0 | 3.70e-01 | 93.4% | 82.8% |
| 1h2uA01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 45.0 | 3.10e-01 | 96.1% | 73.7% |
| 1d2tA00 | 1.20.144.10 | Mainly Alpha › Up-down Bundle › Vanadium-containing Chloroperoxidase; domain 1 › Phosphatidic acid phosphatase type 2/haloperoxidase | 0.51 | 43.0 | 3.21e-01 | 100.0% | 73.4% |
| 6fucA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.51 | 41.0 | 3.11e-01 | 88.2% | 89.1% |
| 2xqyA02 | 1.20.58.1340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 38.0 | 3.17e-01 | 84.2% | 44.8% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4987684 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.76 | 51.0 | 4.20e-01 | 72.4% | 40.8% |
| 4965656 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.74 | 50.0 | 4.27e-01 | 72.4% | 46.1% |
| 3645327 | 3832.1.1.0 ↗ | alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 | 0.65 | 56.0 | 4.35e-01 | 96.1% | 49.4% |
| 4479462 | 109.4.1.179 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nro1 | 0.64 | 52.0 | 3.92e-01 | 93.4% | 35.0% |
| 3786107 | 109.4.1.1376 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U3_assoc_6, HAT_PRP39_N | 0.64 | 48.0 | 3.06e-01 | 81.6% | 18.0% |
| 3275156 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.62 | 53.0 | 4.37e-01 | 97.4% | 84.1% |
| 235712 | 107.1.1.1 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C | 0.61 | 52.0 | 4.24e-01 | 94.7% | 90.1% |
| 50002 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.60 | 44.0 | 3.55e-01 | 77.6% | 80.8% |
| 4609538 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.60 | 47.0 | 4.27e-01 | 98.7% | 60.9% |
| 3705441 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 46.0 | 2.94e-01 | 85.5% | 33.1% |
| 4005245 | 601.46.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Regulatory CZB domain of diguanylate cyclase YdeH › Regulatory CZB domain of diguanylate cyclase YdeH › CZB | 0.59 | 49.0 | 4.07e-01 | 89.5% | 63.8% |
| 3540940 | 109.4.1.434 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAST_1 | 0.58 | 43.0 | 2.73e-01 | 78.9% | 23.5% |
| 5069657 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.58 | 45.0 | 4.28e-01 | 84.2% | 95.6% |
| 3740779 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.58 | 50.0 | 5.04e-01 | 98.7% | 94.7% |
| 3212239 | 109.4.1.18 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA | 0.56 | 42.0 | 2.92e-01 | 85.5% | 22.3% |
| 4025363 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 41.0 | 2.49e-01 | 77.6% | 15.2% |
| 4938873 | 3352.1.1.50 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › DUF2298 | 0.56 | 45.0 | 2.85e-01 | 93.4% | 93.3% |
| 3245866 | 109.4.1.1140 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_PEP5_VPS11 | 0.55 | 40.0 | 2.52e-01 | 77.6% | 19.1% |
| 3734601 | 3788.1.1.17 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF30848 | 0.54 | 39.0 | 3.10e-01 | 76.3% | 71.9% |
| 3719494 | 109.4.1.588 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FPL | 0.53 | 41.0 | 3.08e-01 | 86.8% | 60.0% |
D2
medium
residues 5-64
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.71 | 50.0 | 3.98e-01 | 75.0% | 38.9% |
| 6ioyC02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 48.0 | 3.34e-01 | 85.0% | 47.8% |
| 5o6uB00 | 3.30.70.2540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 | 0.55 | 44.0 | 3.15e-01 | 88.3% | 40.1% |
| 6ruiB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.55 | 46.0 | 3.36e-01 | 98.3% | 41.8% |
| 3p0hB01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 48.0 | 3.05e-01 | 100.0% | 46.4% |
ECOD (1)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.53 | 45.0 | 2.83e-01 | 93.3% | 59.7% |