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MT553342.1__QKO02828.1__SEA_KELCOLE_76__00075

Bact-Vir

MT553342.1__QKO02828.1__SEA_KELCOLE_76__00075

Identity

Accession:
MT553342 ↗
Kingdom:
phage

Quality

67.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-52
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qwuA03 3.30.70.2160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 55.0 3.97e-01 95.7% 28.8%
2p4gA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.71 43.0 2.71e-01 70.2% 10.9%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.70 54.0 3.32e-01 87.2% 16.6%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.68 55.0 4.52e-01 95.7% 46.9%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 56.0 3.97e-01 100.0% 56.2%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 42.0 3.18e-01 72.3% 26.1%
4ckbD02 3.20.100.20 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › 0.66 48.0 3.18e-01 80.9% 32.2%
1vclA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.65 48.0 3.45e-01 83.0% 73.8%
4i4kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 53.0 3.89e-01 100.0% 65.2%
4bhqA00 3.30.70.2830 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 50.0 3.88e-01 95.7% 38.5%
4a2aA02 3.30.1490.110 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.63 55.0 4.53e-01 100.0% 67.8%
1l2mA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.62 47.0 3.73e-01 95.7% 37.3%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 51.0 3.70e-01 100.0% 67.6%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 49.0 3.85e-01 93.6% 47.7%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 48.0 3.78e-01 95.7% 43.5%
4qloA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 43.0 2.65e-01 78.7% 86.5%
1fvzA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 46.0 2.88e-01 87.2% 75.5%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 45.0 3.72e-01 93.6% 63.7%
2rb7A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 48.0 3.75e-01 95.7% 47.7%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.58 45.0 3.49e-01 87.2% 80.7%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 45.0 3.41e-01 91.5% 58.7%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.58 50.0 3.89e-01 95.7% 53.0%
3nlcA01 3.30.70.2700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 47.0 4.10e-01 95.7% 60.5%
1b7yA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 45.0 2.94e-01 97.9% 17.4%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.57 47.0 3.08e-01 100.0% 65.8%
2vatL00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 40.0 2.46e-01 78.7% 89.1%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.56 44.0 3.74e-01 97.9% 100.0%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 43.0 3.41e-01 93.6% 40.5%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 43.0 3.56e-01 91.5% 47.8%
4hlbA00 3.30.70.2960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 3.71e-01 97.9% 83.2%
1cg2A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 3.41e-01 93.6% 40.9%
2wcrB00 3.10.129.140 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein 0.55 49.0 3.44e-01 100.0% 56.8%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 40.0 2.54e-01 87.2% 40.4%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.55 39.0 2.86e-01 85.1% 64.1%
4mx8C01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.55 39.0 2.69e-01 78.7% 33.3%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.55 46.0 3.53e-01 97.9% 93.8%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.39e-01 100.0% 73.1%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.10e-01 78.7% 92.2%
1oi2A02 3.30.1180.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 0.54 42.0 3.08e-01 95.7% 28.4%
1o75A02 2.30.30.470 Mainly Beta › Roll › SH3 type barrels. › Penicillin-binding protein Tp47, domain B 0.53 40.0 3.16e-01 87.2% 66.1%
5ccbA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 41.0 2.89e-01 95.7% 47.1%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 41.0 3.43e-01 95.7% 91.9%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 37.0 3.22e-01 85.1% 43.6%
1ilvA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.52 40.0 2.59e-01 89.4% 50.6%
4qclA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 3.26e-01 97.9% 49.5%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 41.0 2.92e-01 95.7% 57.1%
1v8wA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 40.0 3.00e-01 97.9% 31.8%
1vs0A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.51 39.0 3.20e-01 93.6% 52.7%
4ponA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 39.0 2.82e-01 95.7% 39.5%
5zspA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 43.0 3.13e-01 93.6% 70.5%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 35.0 2.59e-01 85.1% 23.7%
1kutA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 39.0 3.10e-01 100.0% 41.4%
2fdbN00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 39.0 2.91e-01 93.6% 64.2%
4fvmA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 38.0 3.28e-01 97.9% 54.4%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 35.0 3.22e-01 78.7% 54.9%
1sovA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.50 38.0 2.58e-01 80.9% 64.0%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3533770 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.79 46.0 3.47e-01 72.3% 25.7%
4022625 256.1.1.0 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.71 59.0 4.19e-01 97.9% 32.9%
3795831 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 60.0 5.27e-01 95.7% 66.2%
3496292 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 42.0 4.05e-01 78.7% 52.7%
4001734 304.47.1.0 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.67 56.0 4.31e-01 100.0% 40.0%
3264034 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.66 57.0 5.21e-01 100.0% 80.0%
3486585 304.47.1.0 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.66 55.0 4.15e-01 95.7% 59.2%
3510694 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.66 48.0 3.88e-01 78.7% 44.2%
4066189 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.65 46.0 3.92e-01 78.7% 94.1%
3349201 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.65 53.0 3.53e-01 95.7% 22.0%
3313182 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.64 55.0 4.94e-01 100.0% 81.4%
4886881 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 51.0 3.84e-01 97.9% 68.8%
5023975 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.63 49.0 3.79e-01 95.7% 41.6%
3969252 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.62 51.0 3.82e-01 100.0% 42.2%
4626960 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.62 50.0 3.91e-01 95.7% 44.3%
3684759 331.3.1.10 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AtaL 0.61 51.0 3.51e-01 95.7% 28.8%
3190947 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.61 47.0 2.85e-01 93.6% 20.5%
4892175 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.61 50.0 3.75e-01 100.0% 63.0%
3987934 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.61 48.0 3.76e-01 95.7% 41.7%
4288684 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.60 47.0 3.73e-01 93.6% 43.5%
3945028 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.60 48.0 3.77e-01 95.7% 44.3%
5061358 304.55.1.14 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.60 47.0 3.71e-01 93.6% 51.8%
4956622 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.59 49.0 3.72e-01 93.6% 40.9%
3470394 3382.1.1.1 alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.59 48.0 2.99e-01 100.0% 54.1%
3370992 304.48.1.21 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1,Thg1C 0.59 44.0 2.53e-01 87.2% 8.5%
4963974 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.59 47.0 2.96e-01 100.0% 19.1%
3309384 9.13.1.1 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent 0.59 46.0 3.54e-01 91.5% 95.0%
3738615 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.58 45.0 3.58e-01 93.6% 47.0%
3234667 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.58 45.0 2.76e-01 87.2% 80.9%
3495008 3382.1.1.1 alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.58 49.0 2.98e-01 100.0% 74.0%
3608365 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 44.0 2.53e-01 100.0% 7.5%
4809499 304.109.1.0 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.57 49.0 4.01e-01 95.7% 63.5%
3956973 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.56 43.0 2.96e-01 100.0% 43.5%
3355031 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.56 45.0 3.40e-01 95.7% 37.8%
3526672 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.56 46.0 2.70e-01 91.5% 11.2%
3867644 3382.1.1.1 alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.56 48.0 3.00e-01 100.0% 68.1%
3592296 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 42.0 3.27e-01 87.2% 41.7%
4583759 3382.1.1.1 alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.56 48.0 2.94e-01 100.0% 68.6%
3560747 3382.1.1.1 alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.56 47.0 2.90e-01 100.0% 69.0%
3912477 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.55 38.0 2.41e-01 76.6% 30.3%
4278285 5061.1.1.1 alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY 0.55 45.0 2.66e-01 97.9% 83.1%
4841506 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.54 46.0 3.85e-01 100.0% 55.7%
3656766 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.54 40.0 2.84e-01 78.7% 24.7%
3620201 3382.1.1.1 alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.54 44.0 2.76e-01 100.0% 73.4%
5038450 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.54 39.0 2.52e-01 80.9% 43.3%
3938146 3382.1.1.1 alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.53 45.0 2.75e-01 100.0% 69.6%
3923193 3382.1.1.1 alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.53 45.0 2.76e-01 100.0% 54.1%
4808078 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.53 39.0 3.54e-01 87.2% 69.3%
3553551 4969.1.1.0 alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.53 41.0 3.47e-01 97.9% 57.9%
3959362 101.1.1.531 alpha arrays › HTH › HTH › Three-helical HTH › WS_DGAT_cat 0.52 40.0 2.93e-01 87.2% 33.3%
3601924 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.52 42.0 3.01e-01 100.0% 61.1%
3689675 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.52 42.0 3.49e-01 91.5% 70.6%
3870777 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 36.0 2.30e-01 80.9% 29.0%
4985406 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.51 41.0 3.65e-01 100.0% 60.8%
4838365 304.4.1.23 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dyp_perox_C 0.51 39.0 3.14e-01 95.7% 45.3%
3997327 3315.1.1.0 a+b complex topology › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase 0.51 34.0 2.83e-01 70.2% 36.8%
3217597 109.6.1.2 alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.51 41.0 2.34e-01 87.2% 33.6%
3585959 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 43.0 2.73e-01 97.9% 49.1%