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MT560058.1__QPI17927.1__POP12_135__00135

Bact-Vir

MT560058.1__QPI17927.1__POP12_135__00135

Identity

Accession:
MT560058 ↗
Kingdom:
phage

Quality

62.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 145-205
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21446.4 best Gp34_trimer 42.7 1.00e-10 80.3% 37.4%
D2 medium residues 284-336
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20744.4 best gp37_trimer 30.3 4.70e-07 100.0% 47.4%
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a0tA01 6.20.80.10 Special › Other non-globular › Glycosyl hydrolase fold › 0.89 78.0 7.41e-01 96.2% 82.0%
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.65 52.0 3.80e-01 100.0% 31.2%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.64 51.0 4.05e-01 100.0% 41.5%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.64 52.0 3.70e-01 98.1% 28.4%
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.62 49.0 3.65e-01 100.0% 31.0%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 52.0 3.71e-01 100.0% 32.8%
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.61 50.0 3.86e-01 98.1% 42.8%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 44.0 3.44e-01 81.1% 37.9%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.60 47.0 3.69e-01 100.0% 38.1%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 43.0 3.38e-01 81.1% 37.3%
5iz3A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.60 51.0 3.64e-01 100.0% 40.2%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 43.0 3.34e-01 79.2% 76.7%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.59 48.0 2.78e-01 100.0% 11.9%
4o7iA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 49.0 3.48e-01 98.1% 69.2%
2gq1A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 51.0 3.61e-01 100.0% 45.3%
2q74A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 48.0 3.71e-01 94.3% 44.2%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 46.0 3.01e-01 94.3% 39.4%
3qmfA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.58 48.0 3.68e-01 96.2% 53.7%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 3.98e-01 81.1% 80.0%
4n81A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.58 49.0 3.68e-01 96.2% 54.4%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 48.0 3.53e-01 100.0% 52.8%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 49.0 3.42e-01 100.0% 42.9%
2p3nA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 47.0 3.59e-01 94.3% 59.3%
1pguA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 48.0 3.09e-01 100.0% 27.0%
3lv0A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 46.0 3.61e-01 100.0% 66.9%
6z46V01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 45.0 3.22e-01 94.3% 56.0%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.57 48.0 3.11e-01 100.0% 34.0%
3e82E02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 46.0 3.27e-01 100.0% 69.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.56 42.0 3.96e-01 84.9% 80.6%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.56 38.0 3.80e-01 71.7% 74.1%
1g0hA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.56 45.0 3.49e-01 96.2% 56.2%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.94e-01 100.0% 24.5%
2bjiA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.55 45.0 3.40e-01 96.2% 59.7%
4z9mB02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.54 44.0 3.10e-01 100.0% 42.4%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 47.0 3.65e-01 100.0% 47.1%
5x7qA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.53 41.0 2.81e-01 100.0% 20.8%
3ligA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 43.0 3.18e-01 96.2% 55.6%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 45.0 3.44e-01 100.0% 70.9%
1szzA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.53 45.0 3.23e-01 100.0% 56.7%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 2.99e-01 98.1% 38.5%
3imhA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 42.0 2.70e-01 100.0% 21.1%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 2.91e-01 100.0% 38.8%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.72e-01 96.2% 100.0%
3ed4A02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 42.0 3.72e-01 94.3% 66.3%
4ad8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 2.75e-01 96.2% 27.1%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.52 41.0 3.32e-01 100.0% 44.0%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.58e-01 84.9% 73.2%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 40.0 3.08e-01 90.6% 49.6%
1o7dD01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 33.0 2.22e-01 92.5% 13.8%
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 3.22e-01 92.5% 94.1%
2xvlA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.50 40.0 2.75e-01 96.2% 73.9%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
185629 79.1.1.8 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › gp37_trimer 0.88 78.0 6.32e-01 98.1% 54.3%
3931562 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.66 52.0 3.47e-01 100.0% 20.9%
3879656 633.23.1.1 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.64 44.0 3.02e-01 71.7% 21.1%
3246494 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.64 51.0 3.34e-01 100.0% 19.6%
3387155 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.64 54.0 3.76e-01 100.0% 68.7%
3471142 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.64 49.0 3.46e-01 100.0% 24.7%
3242234 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.62 48.0 2.82e-01 100.0% 9.0%
3993048 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.62 48.0 3.92e-01 100.0% 42.7%
1275015 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.62 48.0 4.01e-01 100.0% 47.1%
3550970 719.1.1.5 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.60 40.0 3.29e-01 71.7% 38.2%
3717674 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.60 46.0 3.98e-01 100.0% 52.2%
4324894 4018.1.1.1 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.60 51.0 3.53e-01 100.0% 39.0%
4283021 4018.1.1.1 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.59 51.0 3.64e-01 100.0% 41.8%
4541046 4018.1.1.1 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.59 51.0 3.58e-01 100.0% 38.3%
4033570 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.58 47.0 3.57e-01 96.2% 53.1%
4121572 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.58 46.0 2.90e-01 98.1% 35.8%
3608279 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 41.0 3.46e-01 81.1% 43.8%
4425568 5.1.4.163 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vgb_lyase 0.57 49.0 3.10e-01 100.0% 38.3%
3180248 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.57 47.0 4.00e-01 100.0% 96.0%
4985368 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.57 40.0 3.85e-01 90.6% 63.3%
4487231 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.57 46.0 3.60e-01 100.0% 63.6%
3964810 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.57 48.0 3.60e-01 96.2% 62.9%
2494274 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.57 48.0 3.61e-01 100.0% 65.0%
3952398 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.56 46.0 2.99e-01 100.0% 24.5%
3278164 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.56 46.0 3.52e-01 94.3% 39.3%
3222243 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.56 47.0 3.50e-01 96.2% 60.0%
3828348 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 40.0 3.78e-01 77.4% 73.8%
3945220 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.56 47.0 3.50e-01 96.2% 57.2%
3399614 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.55 45.0 3.39e-01 96.2% 58.7%
5029363 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.55 39.0 3.84e-01 75.5% 78.3%
3465976 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 38.0 3.68e-01 77.4% 73.8%
4165715 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.54 43.0 3.40e-01 100.0% 64.3%
3596180 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 40.0 3.33e-01 84.9% 77.1%
3618896 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 43.0 4.15e-01 98.1% 87.5%
4940664 9.16.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 0.53 39.0 3.47e-01 83.0% 56.5%
3994162 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.53 46.0 3.26e-01 100.0% 65.1%
3177452 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.48e-01 96.2% 16.3%
3612587 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.53 40.0 3.90e-01 86.8% 75.0%
3588147 2002.1.1.102 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.52 43.0 2.60e-01 98.1% 28.9%
4311063 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.52 42.0 3.03e-01 98.1% 32.8%
5059099 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.52 45.0 3.86e-01 100.0% 60.2%
3800040 5.1.4.422 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Rol-3 0.52 43.0 2.93e-01 100.0% 52.9%
3715024 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 39.0 3.41e-01 100.0% 51.1%
3988706 243.3.1.13 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5590 0.51 43.0 3.98e-01 94.3% 91.4%
3581955 5.1.4.450 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ldl_recept_b 0.51 40.0 3.16e-01 98.1% 82.1%
D3 medium residues 598-717
PDB
D4 medium residues 718-800
PDB