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MT560058.1__QPI17930.1__POP12_138__00138
Bact-VirMT560058.1__QPI17930.1__POP12_138__00138
Identity
- Accession:
- MT560058 ↗
- Kingdom:
- phage
Quality
74.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Pectobacterium_phage_POP12
TaxID: 2741065
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-79
Domain cluster:
rep: IMGVR_UViG_3300028602_002087-3300028602-Ga0265294_1000673614__D3-70
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jh3A03 | 3.30.1360.190 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.65 | 45.0 | 3.96e-01 | 71.4% | 90.2% |
| 5h4eA02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.63 | 44.0 | 3.87e-01 | 74.0% | 73.1% |
| 4lqzA00 | 2.40.128.570 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 | 0.61 | 41.0 | 3.53e-01 | 70.1% | 98.5% |
| 2p84A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.59 | 47.0 | 4.81e-01 | 97.4% | 95.9% |
| 2wjsA03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 41.0 | 3.22e-01 | 75.3% | 77.6% |
| 3qwuA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.57 | 38.0 | 2.96e-01 | 70.1% | 82.2% |
| 1xv2C01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.56 | 46.0 | 4.10e-01 | 90.9% | 80.2% |
| 6grrB01 | 3.30.457.10 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain | 0.55 | 37.0 | 3.75e-01 | 88.3% | 68.4% |
| 4bt2A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.54 | 45.0 | 4.00e-01 | 94.8% | 78.1% |
| 1i82A00 | 2.60.40.1190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 42.0 | 3.32e-01 | 96.1% | 89.9% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588096 | 4.1.1.189 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2829 | 0.84 | 63.0 | 6.45e-01 | 77.9% | 97.3% |
| 4587271 | 9002.1.1.1 ↗ | a/b three-layered sandwiches › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 | 0.69 | 30.0 | 3.71e-01 | 80.5% | 62.0% |
| 4034291 | 9.19.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › hypothetical protein SAV1798 › hypothetical protein SAV1798 › DUF4909 | 0.63 | 43.0 | 3.67e-01 | 71.4% | 100.0% |
| 3980228 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.62 | 46.0 | 3.99e-01 | 80.5% | 49.6% |
| 3947698 | 4111.1.1.1 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AAL_decarboxy | 0.60 | 50.0 | 3.63e-01 | 94.8% | 90.6% |
| 2390140 | 4111.1.1.1 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AAL_decarboxy | 0.59 | 49.0 | 3.57e-01 | 94.8% | 90.6% |
| 3512816 | 5.1.4.313 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_BBS7 | 0.58 | 42.0 | 2.78e-01 | 77.9% | 76.9% |
| 3249251 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.58 | 42.0 | 3.54e-01 | 79.2% | 94.9% |
| 3407060 | 3257.1.1.1 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N | 0.57 | 45.0 | 3.56e-01 | 87.0% | 59.4% |
| 3858787 | 3257.1.1.1 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N | 0.56 | 45.0 | 3.40e-01 | 87.0% | 56.2% |
| 3567571 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.56 | 43.0 | 3.37e-01 | 81.8% | 49.7% |
| 3938259 | 3257.1.1.1 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N | 0.56 | 45.0 | 3.50e-01 | 87.0% | 60.0% |
| 3981360 | 4.1.1.188 ↗ | beta barrels › SH3 › SH3 › SH3 › Imm26 | 0.56 | 40.0 | 3.42e-01 | 79.2% | 62.1% |
| 3846048 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.53 | 39.0 | 3.02e-01 | 81.8% | 83.9% |
| 5012906 | 2498.2.1.6 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › S_layer_C | 0.53 | 37.0 | 2.68e-01 | 71.4% | 35.0% |
| 5060684 | 3268.1.1.1 ↗ | a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › XdhC_CoxI | 0.53 | 36.0 | 3.20e-01 | 70.1% | 85.5% |
| 3914794 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.51 | 43.0 | 3.31e-01 | 100.0% | 55.6% |