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MT560058.1__QPI17988.1__POP12_196__00196

Bact-Vir

MT560058.1__QPI17988.1__POP12_196__00196

Identity

Accession:
MT560058 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Pectobacterium_phage_POP12

TaxID: 2741065

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-76_91-108
PDB
Domain cluster: rep: HM114315.1__AAT38508.1__Acj133p065__00065__D5-83
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11113.15 best Phage_head_chap 73.7 1.20e-20 59.8% 100.0%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ns4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 44.0 3.16e-01 71.7% 38.4%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 40.0 3.38e-01 71.7% 67.7%
6r77A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 40.0 3.40e-01 72.8% 68.1%
6j7cA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 39.0 3.29e-01 71.7% 68.5%
5a67A00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.56 39.0 2.99e-01 72.8% 75.2%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.54 38.0 3.94e-01 85.9% 79.1%
3r4kA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 37.0 3.05e-01 72.8% 90.5%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.52 37.0 2.87e-01 73.9% 100.0%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 32.0 2.69e-01 73.9% 35.0%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 41.0 2.77e-01 88.0% 81.7%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.51 35.0 3.54e-01 71.7% 69.8%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 35.0 3.07e-01 71.7% 88.0%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.51 39.0 3.64e-01 85.9% 84.4%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.51 35.0 3.59e-01 84.8% 73.6%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 34.0 3.72e-01 78.3% 87.5%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.50 41.0 3.38e-01 90.2% 79.5%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4423739 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 39.0 3.90e-01 77.2% 63.2%
4955625 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.59 41.0 3.40e-01 71.7% 66.5%
4665960 286.1.1.0 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.58 41.0 3.40e-01 71.7% 69.1%
1115584 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.58 41.0 3.31e-01 73.9% 61.4%
3284738 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.58 40.0 3.34e-01 71.7% 67.9%
4098502 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.57 40.0 3.21e-01 71.7% 58.4%
3243970 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 37.0 3.64e-01 73.9% 60.0%
4288786 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.56 40.0 3.32e-01 83.7% 41.8%
3173242 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.56 36.0 3.29e-01 80.4% 49.2%
3253514 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.54 39.0 3.81e-01 85.9% 69.0%
3426443 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.54 36.0 3.36e-01 89.1% 52.5%
3553413 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.54 33.0 3.49e-01 73.9% 67.1%
3738504 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 36.0 3.43e-01 81.5% 57.3%
4014819 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 41.0 3.09e-01 84.8% 91.8%
3255870 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.53 37.0 3.59e-01 73.9% 94.3%
3702154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 32.0 3.43e-01 73.9% 72.0%
4645759 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.51 40.0 3.16e-01 84.8% 79.0%