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MT596502.1__QLF87141.1__BESEP5_00199__00199

Bact-Vir

MT596502.1__QLF87141.1__BESEP5_00199__00199

Identity

Accession:
MT596502 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Sepunavirus› Staphylococcus_phage_vB_SepM_BE05

TaxID: 2750277

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-76
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.74 36.0 3.43e-01 78.7% 39.3%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 39.0 3.71e-01 77.3% 43.7%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 38.0 4.63e-01 82.7% 87.2%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 45.0 3.64e-01 70.7% 100.0%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.66 54.0 4.70e-01 92.0% 99.2%
3c12A01 2.30.30.910 Mainly Beta › Roll › SH3 type barrels. › 0.65 39.0 4.50e-01 90.7% 86.3%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 32.0 3.33e-01 96.0% 50.7%
7e9uA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.64 46.0 2.82e-01 76.0% 19.9%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.63 37.0 3.28e-01 93.3% 38.6%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.61 34.0 3.50e-01 100.0% 55.6%
1xv2C01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.61 38.0 3.36e-01 97.3% 41.4%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.61 47.0 3.92e-01 82.7% 48.8%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 41.0 3.56e-01 72.0% 93.2%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 34.0 3.78e-01 73.3% 72.4%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.59 45.0 3.84e-01 82.7% 50.8%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.58 42.0 3.59e-01 76.0% 69.5%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 41.0 3.52e-01 74.7% 93.4%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.58 32.0 3.43e-01 73.3% 60.6%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 40.0 2.70e-01 93.3% 18.3%
2r9zA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 40.0 3.50e-01 73.3% 93.2%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 3.94e-01 100.0% 75.4%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 3.53e-01 81.3% 75.4%
1v73A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 42.0 2.78e-01 81.3% 80.7%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.61e-01 84.0% 75.8%
2v3aA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 41.0 3.41e-01 78.7% 84.4%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 41.0 3.43e-01 81.3% 73.0%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 41.0 4.15e-01 97.3% 84.7%
1m9sA03 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.97e-01 77.3% 92.0%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 3.60e-01 86.7% 68.5%
1xdiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 3.72e-01 88.0% 88.2%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.53 39.0 3.78e-01 98.7% 67.4%
6gszA04 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.53 47.0 3.04e-01 100.0% 29.1%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.52 42.0 3.92e-01 89.3% 87.6%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.82e-01 81.3% 84.9%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.52 35.0 3.53e-01 97.3% 71.2%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.51 40.0 3.23e-01 89.3% 89.9%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3230533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 39.0 4.80e-01 89.3% 91.1%
3435779 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.70 38.0 4.35e-01 94.7% 72.7%
3425564 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 48.0 2.88e-01 72.0% 41.8%
3790212 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 46.0 3.21e-01 70.7% 60.8%
3991341 5.1.4.304 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.67 46.0 2.67e-01 70.7% 33.2%
4888761 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 45.0 3.33e-01 70.7% 87.4%
3386276 809.2.1.1 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.63 38.0 4.39e-01 72.0% 83.6%
4554841 6020.1.1.1 ↗ a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C 0.63 44.0 3.58e-01 74.7% 65.5%
4835224 5.1.4.258 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.63 47.0 3.12e-01 80.0% 69.5%
3764432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 38.0 4.07e-01 88.0% 70.8%
3379750 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.62 46.0 3.81e-01 80.0% 64.3%
5017637 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.62 39.0 4.42e-01 98.7% 87.3%
3901117 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.61 38.0 2.87e-01 89.3% 26.1%
3282467 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.61 43.0 3.61e-01 73.3% 89.6%
3584571 4.1.1.56 ↗ beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.60 37.0 2.61e-01 88.0% 19.6%
3818428 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.60 41.0 4.16e-01 93.3% 72.0%
3388897 5.1.4.407 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, Alsin_RLD 0.59 46.0 2.93e-01 82.7% 30.5%
4992901 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.59 43.0 2.98e-01 77.3% 58.8%
4483985 9.7.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.58 42.0 4.01e-01 98.7% 64.4%
3272249 376.1.1.6 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-MIZ 0.58 44.0 4.01e-01 81.3% 100.0%
4554308 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 41.0 3.11e-01 74.7% 62.3%
5076199 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 4.30e-01 84.0% 85.9%
3264598 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.57 42.0 3.07e-01 78.7% 95.1%
5052861 211.1.1.7 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.56 40.0 3.25e-01 74.7% 72.9%
2462227 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.55 43.0 3.58e-01 84.0% 75.2%
3592077 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 47.0 3.90e-01 100.0% 93.8%
4157284 9.7.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.55 48.0 4.25e-01 100.0% 67.6%
4146527 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.55 42.0 3.54e-01 82.7% 89.2%
3088269 5.1.4.255 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, WD40_RLD 0.53 43.0 3.72e-01 86.7% 86.8%
3713588 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 45.0 4.26e-01 100.0% 93.7%
3989970 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 39.0 4.14e-01 78.7% 96.9%
3387884 2003.1.2.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 0.52 41.0 3.46e-01 82.7% 86.7%
4468946 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 37.0 2.72e-01 74.7% 57.0%
5012906 2498.2.1.6 ↗ mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › S_layer_C 0.52 38.0 2.73e-01 76.0% 89.7%
3220075 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 43.0 3.41e-01 88.0% 88.6%
4017381 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.52 41.0 3.72e-01 88.0% 88.6%
3975709 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 41.0 3.48e-01 85.3% 89.2%
3971930 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 41.0 3.17e-01 85.3% 66.9%
3784273 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.51 40.0 2.45e-01 84.0% 57.9%
3505913 221.1.1.112 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ULD_3 0.51 42.0 3.75e-01 92.0% 91.7%
4122026 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 41.0 3.07e-01 85.3% 61.1%
5031689 304.120.1.6 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.50 38.0 3.85e-01 84.0% 81.3%
3586827 274.1.1.25 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.50 44.0 3.86e-01 100.0% 72.2%