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MT597419.1__QLI47578.1__phi3MF5_27__00027
Bact-VirMT597419.1__QLI47578.1__phi3MF5_27__00027
Identity
- Accession:
- MT597419 ↗
- Kingdom:
- phage
Quality
76.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autotranscriptaviridae›
Warsawvirus›
Pseudomonas_phage_vB_PsyP_3MF5
TaxID: 2749426
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-59
Domain cluster:
rep: ON615601.1__UTS52144.1__X__00196__D4-76
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2d9uA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 49.0 | 4.55e-01 | 89.8% | 64.9% |
| 3mtsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 46.0 | 4.61e-01 | 89.8% | 79.0% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 43.0 | 4.28e-01 | 78.0% | 92.1% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 42.0 | 4.12e-01 | 74.6% | 86.2% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 45.0 | 4.42e-01 | 84.7% | 89.4% |
| 1viuC00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.59 | 45.0 | 3.29e-01 | 86.4% | 70.7% |
| 1pv1A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 40.0 | 2.64e-01 | 74.6% | 48.3% |
| 5r4qA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.57 | 42.0 | 3.04e-01 | 83.1% | 69.4% |
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.57 | 42.0 | 3.51e-01 | 81.4% | 70.3% |
| 3fcxB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 39.0 | 2.61e-01 | 76.3% | 46.9% |
| 3h6qA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 42.0 | 3.19e-01 | 98.3% | 31.0% |
| 4ckbD03 | 2.40.50.830 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 41.0 | 3.31e-01 | 91.5% | 38.1% |
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.55 | 40.0 | 3.10e-01 | 81.4% | 97.2% |
| 4by6B00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.55 | 38.0 | 2.80e-01 | 74.6% | 26.5% |
| 3htyA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 42.0 | 3.68e-01 | 86.4% | 96.8% |
| 2c7yA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 42.0 | 2.61e-01 | 86.4% | 58.1% |
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 39.0 | 3.85e-01 | 76.3% | 87.1% |
| 1j0wB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 36.0 | 3.06e-01 | 78.0% | 39.8% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 41.0 | 3.17e-01 | 88.1% | 57.7% |
| 2gfgA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.53 | 42.0 | 3.00e-01 | 89.8% | 42.9% |
| 5wceA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 36.0 | 2.95e-01 | 76.3% | 71.3% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 41.0 | 3.72e-01 | 89.8% | 75.9% |
| 1mpgA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.52 | 39.0 | 3.31e-01 | 88.1% | 84.8% |
| 2yfsA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.50 | 42.0 | 2.55e-01 | 100.0% | 75.2% |
| 4wsfA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 36.0 | 3.00e-01 | 84.7% | 41.4% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4073200 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.64 | 47.0 | 4.57e-01 | 78.0% | 90.8% |
| 4165306 | 2.4.1.12 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal | 0.63 | 41.0 | 3.45e-01 | 79.7% | 38.1% |
| 4935901 | 2.1.1.382 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28814 | 0.63 | 45.0 | 4.01e-01 | 81.4% | 51.7% |
| 3438878 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 45.0 | 3.60e-01 | 83.1% | 78.9% |
| 4618633 | 4.26.1.1 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 | 0.61 | 40.0 | 4.00e-01 | 88.1% | 66.1% |
| 3948387 | 1104.1.1.1 ↗ | a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › DUF927 | 0.61 | 47.0 | 3.64e-01 | 89.8% | 47.3% |
| 3338279 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 45.0 | 3.24e-01 | 84.7% | 52.5% |
| 4638791 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.59 | 43.0 | 3.04e-01 | 78.0% | 84.3% |
| 402817 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.59 | 43.0 | 3.59e-01 | 79.7% | 72.6% |
| 3251342 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.58 | 43.0 | 3.49e-01 | 81.4% | 68.3% |
| 3893735 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.58 | 43.0 | 3.53e-01 | 81.4% | 64.3% |
| 3441015 | 1.1.1.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N | 0.58 | 48.0 | 3.00e-01 | 96.6% | 34.3% |
| 3509056 | 221.13.1.0 ↗ | a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain | 0.58 | 46.0 | 3.66e-01 | 89.8% | 86.4% |
| 3900117 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.57 | 41.0 | 3.26e-01 | 79.7% | 70.7% |
| 4234615 | 330.4.1.0 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain | 0.57 | 41.0 | 3.84e-01 | 78.0% | 90.7% |
| 3262159 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.57 | 42.0 | 3.38e-01 | 83.1% | 60.0% |
| 3509606 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 41.0 | 2.92e-01 | 79.7% | 38.5% |
| 4029229 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.56 | 42.0 | 4.47e-01 | 79.7% | 100.0% |
| 3783181 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 41.0 | 3.45e-01 | 81.4% | 71.8% |
| 3904071 | 214.1.1.11 ↗ | a+b two layers › SH2 › SH2 › SH2 › PF27628 | 0.56 | 45.0 | 3.73e-01 | 96.6% | 74.2% |
| 4389484 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.56 | 45.0 | 2.98e-01 | 94.9% | 31.6% |
| 5018480 | 1104.1.1.0 ↗ | a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain | 0.56 | 46.0 | 3.38e-01 | 98.3% | 63.9% |
| 4173765 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.56 | 42.0 | 3.99e-01 | 86.4% | 90.7% |
| 3266842 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 39.0 | 3.20e-01 | 78.0% | 71.2% |
| 3920675 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.55 | 39.0 | 3.66e-01 | 76.3% | 73.3% |
| 3479794 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.55 | 37.0 | 2.35e-01 | 71.2% | 32.4% |
| 5050683 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 36.0 | 2.91e-01 | 71.2% | 38.4% |
| 3876835 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.53 | 37.0 | 2.99e-01 | 76.3% | 64.6% |
| 3955541 | 2003.1.2.155 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_7 | 0.53 | 41.0 | 3.20e-01 | 86.4% | 100.0% |
| 3351249 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.53 | 38.0 | 3.11e-01 | 79.7% | 93.6% |
| 3584992 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.51 | 35.0 | 2.45e-01 | 72.9% | 44.9% |
| 5064080 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.51 | 37.0 | 2.46e-01 | 79.7% | 21.2% |
| 3565211 | 3223.1.1.1 ↗ | beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC | 0.50 | 37.0 | 2.25e-01 | 84.7% | 32.0% |
| 3476535 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.50 | 43.0 | 3.36e-01 | 100.0% | 70.4% |