←Back to structures
MT611523.1__QMV33939.1__X__00153
Bact-VirMT611523.1__QMV33939.1__X__00153
Identity
- Accession:
- MT611523 ↗
- Kingdom:
- phage
Quality
77.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Gaprivervirus›
Escherichia_phage_DK-13
TaxID: 2746075
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-73
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.81 | 59.0 | 6.11e-01 | 76.5% | 85.9% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.81 | 59.0 | 6.12e-01 | 76.5% | 88.9% |
| 1pd3A00 | 1.10.287.230 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.81 | 57.0 | 6.32e-01 | 75.0% | 100.0% |
| 6f1eA01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.80 | 62.0 | 4.73e-01 | 86.8% | 39.6% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.79 | 59.0 | 5.62e-01 | 79.4% | 77.2% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.78 | 52.0 | 5.82e-01 | 73.5% | 90.4% |
| 1t7sA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.75 | 60.0 | 4.77e-01 | 94.1% | 45.0% |
| 4a4kA01 | 1.20.1500.20 | Mainly Alpha › Up-down Bundle › YheA-like fold › | 0.74 | 62.0 | 5.12e-01 | 88.2% | 54.9% |
| 1fouA01 | 1.10.246.30 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.74 | 51.0 | 5.02e-01 | 72.1% | 70.3% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.74 | 52.0 | 4.94e-01 | 75.0% | 62.5% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 59.0 | 5.48e-01 | 88.2% | 69.9% |
| 1ylmA00 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.73 | 58.0 | 4.56e-01 | 86.8% | 95.1% |
| 2fb5A01 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.73 | 57.0 | 5.63e-01 | 83.8% | 79.2% |
| 3eabE00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.72 | 60.0 | 5.59e-01 | 92.6% | 72.1% |
| 3nvoB02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.71 | 58.0 | 4.88e-01 | 89.7% | 65.5% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 54.0 | 4.82e-01 | 86.8% | 84.3% |
| 1m6nA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.69 | 49.0 | 3.93e-01 | 75.0% | 40.0% |
| 2b3tB01 | 6.10.140.1980 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 50.0 | 5.18e-01 | 98.5% | 81.5% |
| 3ieeA02 | 1.20.58.820 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Uncharacterised protein PF12889, C-terminal DUF3829 | 0.67 | 55.0 | 4.85e-01 | 92.6% | 61.2% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 51.0 | 4.90e-01 | 82.4% | 71.8% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.65 | 45.0 | 4.90e-01 | 73.5% | 100.0% |
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 60.0 | 5.81e-01 | 100.0% | 89.2% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.65 | 45.0 | 4.68e-01 | 72.1% | 93.4% |
| 1z0pA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 52.0 | 5.09e-01 | 97.1% | 82.2% |
| 2x6hA03 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.62 | 46.0 | 3.34e-01 | 77.9% | 55.0% |
| 4q20A01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.61 | 42.0 | 4.06e-01 | 75.0% | 68.3% |
| 1l5jA03 | 3.40.1060.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 | 0.58 | 40.0 | 3.07e-01 | 72.1% | 42.2% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3788393 | 11.1.7.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › PEBP-like › PBP | 0.91 | 64.0 | 3.94e-01 | 73.5% | 14.9% |
| 3988582 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.85 | 68.0 | 5.14e-01 | 94.1% | 39.3% |
| 4050314 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.82 | 59.0 | 5.62e-01 | 76.5% | 67.5% |
| 3577099 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.81 | 73.0 | 5.46e-01 | 97.1% | 61.3% |
| 3634546 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.81 | 57.0 | 5.54e-01 | 73.5% | 66.7% |
| 4043561 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.81 | 66.0 | 5.51e-01 | 86.8% | 68.2% |
| 4977416 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.81 | 64.0 | 4.26e-01 | 83.8% | 25.1% |
| 4982959 | 3922.1.1.357 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Auto_anti-p27 | 0.81 | 63.0 | 5.44e-01 | 94.1% | 56.0% |
| 3621403 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.80 | 73.0 | 5.50e-01 | 98.5% | 62.7% |
| 4001186 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.80 | 63.0 | 4.45e-01 | 83.8% | 31.6% |
| 4025328 | 603.1.1.228 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, STX6_10_61_N | 0.79 | 72.0 | 4.95e-01 | 97.1% | 68.6% |
| 3794775 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.79 | 63.0 | 6.44e-01 | 83.8% | 92.3% |
| 3441715 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.78 | 67.0 | 5.66e-01 | 92.6% | 70.9% |
| 5045370 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.77 | 63.0 | 6.74e-01 | 100.0% | 98.3% |
| 3286591 | 101.1.2.612 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27059 | 0.77 | 56.0 | 4.29e-01 | 76.5% | 34.9% |
| 3503210 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.77 | 65.0 | 6.34e-01 | 92.6% | 93.3% |
| 3453715 | 603.1.1.118 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF7610 | 0.74 | 63.0 | 5.64e-01 | 91.2% | 71.1% |
| 5070891 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.73 | 64.0 | 6.01e-01 | 92.6% | 78.8% |
| 4239367 | 4274.1.1.3 ↗ | extended segments › Transmembrane helices in MalF N-terminal region › Transmembrane helices in MalF N-terminal region › Transmembrane helices in MalF N-terminal region › TMEM218_N | 0.72 | 48.0 | 5.20e-01 | 72.1% | 83.6% |
| 3243586 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.72 | 53.0 | 5.04e-01 | 89.7% | 66.3% |
| 3988700 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.71 | 50.0 | 3.64e-01 | 75.0% | 27.2% |
| 5045487 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.71 | 66.0 | 5.30e-01 | 100.0% | 68.0% |
| 3808261 | 3826.1.1.27 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF3754 | 0.71 | 49.0 | 4.58e-01 | 75.0% | 57.6% |
| 4537668 | 1134.1.1.8 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › Use1 | 0.68 | 49.0 | 4.79e-01 | 91.2% | 70.7% |
| 156914 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.67 | 53.0 | 4.22e-01 | 88.2% | 93.7% |
| 3564234 | 4970.1.1.16 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › TMEM218_N | 0.59 | 41.0 | 4.33e-01 | 75.0% | 94.5% |