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MT661596.1__QMP24026.1__X__00032

Bact-Vir

MT661596.1__QMP24026.1__X__00032

Identity

Accession:
MT661596 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Taxonomy

TaxID: 2759182

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-66
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v5nA02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.65 58.0 4.27e-01 100.0% 39.3%
2qgqA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 52.0 5.03e-01 98.1% 80.0%
5uayA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.62 44.0 3.88e-01 78.8% 97.6%
2vnuD02 2.40.50.700 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 52.0 4.62e-01 100.0% 67.5%
6wimA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.60 44.0 3.99e-01 80.8% 98.6%
2nttA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 50.0 4.66e-01 100.0% 74.3%
6rqxA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.59 51.0 3.30e-01 98.1% 32.1%
2e6xA00 3.10.20.570 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3248 0.59 52.0 4.82e-01 100.0% 83.8%
3vb0A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 50.0 3.83e-01 100.0% 90.7%
7z0sE01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.58 50.0 3.91e-01 100.0% 62.2%
4bl8B03 3.30.1360.230 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Sufu, C-terminal domain 0.58 48.0 3.59e-01 100.0% 36.4%
1jt8A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 47.0 3.89e-01 98.1% 49.0%
5efrA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.58 41.0 3.67e-01 78.8% 98.8%
1vx7X00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.58 42.0 3.53e-01 80.8% 99.0%
3aihB01 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.58 49.0 3.97e-01 100.0% 49.5%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 43.0 3.32e-01 84.6% 76.7%
5b3pA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.57 49.0 3.71e-01 100.0% 61.9%
4hc5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 37.0 2.81e-01 84.6% 26.0%
3cskA03 3.30.70.2600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 50.0 4.37e-01 98.1% 65.8%
1kw3B02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 47.0 3.50e-01 100.0% 83.8%
2kvaA01 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.57 48.0 3.63e-01 100.0% 38.3%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.57 40.0 3.59e-01 78.8% 94.0%
4rt5A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 49.0 3.97e-01 100.0% 96.0%
6j09A02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 40.0 3.61e-01 78.8% 98.7%
4k3bA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 42.0 3.74e-01 86.5% 94.0%
2x5rA01 3.30.470.40 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.55 45.0 3.54e-01 94.2% 41.7%
7z7vC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.55 47.0 3.64e-01 100.0% 65.4%
4k3bA05 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.55 40.0 3.65e-01 82.7% 93.7%
1yelA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.55 43.0 3.48e-01 86.5% 75.5%
3wwvA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 43.0 4.11e-01 96.2% 71.9%
4tpsD00 3.30.300.180 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DnaA, N-terminal domain 0.55 37.0 3.34e-01 75.0% 89.3%
4nnzA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.54 46.0 3.12e-01 98.1% 86.5%
1d2oA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.54 38.0 3.46e-01 80.8% 97.5%
5uayA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 40.0 3.58e-01 86.5% 89.0%
6u8yK01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.53 46.0 3.30e-01 98.1% 46.8%
3gr0D01 3.30.70.1780 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 4.34e-01 90.4% 100.0%
1vb3A02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 44.0 3.05e-01 100.0% 93.5%
1ilvA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.51 41.0 2.81e-01 100.0% 25.3%
3iuzA00 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.51 42.0 2.70e-01 100.0% 70.9%
4hkjD00 2.60.240.30 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › 0.51 42.0 3.00e-01 100.0% 45.2%
1p16B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 3.23e-01 98.1% 43.6%
2q34A01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.51 47.0 3.14e-01 100.0% 31.8%
2pt7G01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 43.0 3.82e-01 98.1% 75.6%
3q91B00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.50 43.0 3.27e-01 100.0% 39.7%
2x8xX02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.50 36.0 3.34e-01 82.7% 97.4%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3317763 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.69 60.0 5.06e-01 100.0% 70.0%
3487243 59.1.1.0 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.68 52.0 3.81e-01 84.6% 91.0%
3430671 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.68 53.0 3.97e-01 84.6% 52.0%
3508632 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 58.0 5.19e-01 100.0% 72.0%
3369773 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 46.0 4.73e-01 86.5% 76.0%
3318017 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.66 56.0 5.06e-01 100.0% 84.0%
4273244 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 55.0 4.84e-01 100.0% 65.0%
3657655 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.63 52.0 4.57e-01 94.2% 75.0%
4168700 3121.1.1.2 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 0.63 47.0 4.14e-01 82.7% 85.0%
4574038 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.61 37.0 3.82e-01 100.0% 64.0%
4229016 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.61 50.0 4.60e-01 98.1% 71.0%
4884441 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 51.0 4.26e-01 96.2% 63.4%
4376939 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.60 50.0 4.66e-01 98.1% 77.1%
3991987 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.60 52.0 3.33e-01 100.0% 30.8%
3211018 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.60 52.0 3.33e-01 100.0% 30.8%
1273132 2.2.1.1 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Stap_Strp_toxin 0.60 50.0 4.38e-01 100.0% 60.5%
4930995 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.60 49.0 4.60e-01 94.2% 73.8%
3451965 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.60 47.0 4.08e-01 86.5% 77.5%
4319130 7527.1.1.1 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.59 50.0 3.29e-01 100.0% 24.4%
3702362 63.1.1.3 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH 0.59 52.0 3.75e-01 100.0% 35.9%
5055480 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 47.0 4.21e-01 100.0% 62.7%
4482073 3121.1.1.2 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 0.59 44.0 3.66e-01 82.7% 71.6%
4927935 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 50.0 4.52e-01 100.0% 72.0%
3267878 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 47.0 4.11e-01 98.1% 64.4%
4649150 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.58 51.0 3.64e-01 100.0% 34.8%
3620401 63.1.1.3 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH 0.58 51.0 3.82e-01 100.0% 42.3%
3263538 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.58 48.0 3.63e-01 100.0% 37.7%
4407567 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.57 48.0 4.55e-01 100.0% 80.0%
3244959 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.57 48.0 4.40e-01 98.1% 72.9%
4607371 3121.1.1.2 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 0.57 41.0 3.82e-01 80.8% 98.6%
4096999 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.57 47.0 4.47e-01 100.0% 78.5%
3702687 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 3.98e-01 98.1% 97.9%
3413904 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.56 45.0 4.10e-01 98.1% 65.0%
2330414 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.56 47.0 3.40e-01 100.0% 45.2%
4943930 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.56 46.0 3.46e-01 100.0% 50.7%
4106725 3121.1.1.2 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 0.56 41.0 3.82e-01 82.7% 100.0%
3661948 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.56 42.0 3.80e-01 84.6% 90.7%
119292 3149.1.1.1 a+b complex topology › Hypothetical protein ORF126 › Hypothetical protein ORF126 › Hypothetical protein ORF126 › ORF126-like 0.55 47.0 3.66e-01 100.0% 41.9%
3488689 508.1.1.0 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain 0.55 47.0 3.65e-01 100.0% 43.8%
4541918 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.55 41.0 3.70e-01 86.5% 95.0%
3604261 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 45.0 4.00e-01 100.0% 87.1%
4206820 3121.1.1.2 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 0.55 41.0 3.54e-01 84.6% 78.9%
3208455 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 47.0 4.65e-01 96.2% 96.3%
5020770 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.55 45.0 3.42e-01 100.0% 52.1%
3400943 2002.1.1.13 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.55 41.0 2.68e-01 88.5% 22.1%
4088295 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 45.0 4.00e-01 98.1% 62.5%
3952545 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.54 38.0 3.42e-01 100.0% 50.6%
4941842 213.3.1.1 a+b three layers › Nat/Ivy › Uncharacterized conserved protein MK0968 › Uncharacterized conserved protein MK0968 › DUF424 0.54 46.0 3.82e-01 100.0% 91.0%
4600928 4272.1.1.0 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like 0.54 45.0 3.24e-01 100.0% 47.6%
2652063 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.53 46.0 3.22e-01 98.1% 42.4%
5058404 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 42.0 3.46e-01 100.0% 44.5%
4224302 316.1.1.54 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RlaP 0.52 45.0 3.59e-01 100.0% 57.3%
3753927 389.1.1.131 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › ASTN_1_2_N 0.52 45.0 3.15e-01 98.1% 58.1%
221111 527.1.1.2 beta sandwiches › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI 0.51 42.0 3.00e-01 100.0% 45.2%
1169087 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 40.0 2.48e-01 98.1% 17.2%