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MT661596.1__QMP24212.1__X__00218

Bact-Vir

MT661596.1__QMP24212.1__X__00218

Identity

Accession:
MT661596 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

Taxonomy

TaxID: 2759182

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-78
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25613.2 best DUF7941 37.6 2.40e-09 86.8% 25.5%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.68 41.0 4.47e-01 71.1% 73.0%
6bu2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.66 45.0 3.60e-01 100.0% 35.3%
5b3pA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.64 54.0 4.45e-01 100.0% 52.2%
3iuzA00 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.63 50.0 3.29e-01 100.0% 20.3%
3rmuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.63 43.0 3.60e-01 100.0% 40.3%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.62 54.0 4.22e-01 100.0% 46.8%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 41.0 3.49e-01 100.0% 40.6%
3lm4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 40.0 3.41e-01 100.0% 39.0%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 44.0 3.70e-01 78.9% 78.2%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 39.0 3.89e-01 92.1% 64.2%
2dkhA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 51.0 3.54e-01 97.4% 55.3%
2shpB03 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 50.0 3.37e-01 100.0% 25.5%
2wyhA07 2.60.40.2220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 42.0 4.22e-01 77.6% 97.4%
1jc4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 39.0 3.22e-01 100.0% 37.9%
4l3aA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 48.0 4.73e-01 100.0% 88.7%
2gxfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.61e-01 78.9% 81.4%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 3.69e-01 82.9% 80.5%
3q91B00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 47.0 4.00e-01 94.7% 78.6%
1s0wC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.55 42.0 3.96e-01 97.4% 68.1%
6s5xA01 2.60.40.3600 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 4.44e-01 100.0% 89.3%
2gqfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 50.0 3.40e-01 98.7% 63.1%
4uf7B00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 45.0 2.87e-01 93.4% 94.9%
6bxzA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.54 49.0 4.44e-01 100.0% 94.1%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.56e-01 82.9% 78.3%
4lmiB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.43e-01 82.9% 64.7%
4rljA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 43.0 3.51e-01 89.5% 98.6%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.53 43.0 3.92e-01 93.4% 86.1%
2kpnA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 4.35e-01 100.0% 89.6%
2mcfA00 3.40.50.11630 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 45.0 3.72e-01 100.0% 54.7%
1g0sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 42.0 3.28e-01 96.1% 45.3%
3g7gH00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 44.0 3.62e-01 100.0% 86.2%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.38e-01 88.2% 77.0%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.41e-01 93.4% 73.2%
3v5nB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 44.0 3.40e-01 100.0% 41.8%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 3.47e-01 92.1% 78.6%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 3.53e-01 92.1% 74.8%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3718964 7039.1.1.0 a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM 0.71 55.0 3.80e-01 82.9% 92.7%
3952333 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.70 43.0 4.60e-01 82.9% 70.8%
3635059 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 41.0 2.70e-01 82.9% 14.9%
4928276 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.66 48.0 3.46e-01 100.0% 26.2%
5038183 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.65 48.0 3.86e-01 100.0% 40.0%
4493758 7512.1.1.24 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.64 43.0 2.91e-01 100.0% 18.6%
223850 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.63 50.0 3.65e-01 100.0% 31.6%
5044076 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.63 48.0 4.21e-01 100.0% 54.2%
3940554 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.61 50.0 3.36e-01 100.0% 23.1%
3935939 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 53.0 3.47e-01 100.0% 22.5%
4461912 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.61 55.0 4.84e-01 100.0% 83.6%
3924416 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 50.0 3.30e-01 100.0% 21.6%
5044978 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.61 51.0 5.20e-01 98.7% 96.0%
None 0.60 53.0 3.51e-01 100.0% 24.3%
3936075 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.60 50.0 3.23e-01 100.0% 20.3%
5001386 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 46.0 4.49e-01 93.4% 75.3%
4993469 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 46.0 4.55e-01 88.2% 80.0%
2330414 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.59 48.0 3.79e-01 100.0% 41.6%
3699353 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 49.0 3.21e-01 100.0% 21.2%
3517277 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.59 49.0 4.11e-01 94.7% 76.8%
3940062 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 48.0 3.20e-01 100.0% 22.2%
3925839 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 49.0 3.22e-01 100.0% 22.2%
3215420 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 47.0 3.40e-01 89.5% 94.9%
4471006 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.57 52.0 3.42e-01 100.0% 47.7%
None 0.57 51.0 3.80e-01 100.0% 88.3%
4101533 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.57 51.0 3.18e-01 98.7% 39.8%
5052063 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.56 40.0 3.09e-01 100.0% 31.5%
3512337 304.109.1.0 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.56 43.0 4.42e-01 89.5% 90.0%
3216634 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 50.0 3.25e-01 100.0% 22.7%
3600113 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 44.0 3.20e-01 88.2% 39.1%
3624799 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 43.0 2.90e-01 100.0% 20.9%
5000535 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.55 39.0 3.02e-01 100.0% 32.2%
1007197 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 39.0 3.99e-01 89.5% 80.3%
3932471 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 47.0 3.10e-01 100.0% 23.2%
4639747 211.1.1.12 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Pfk_N 0.54 43.0 4.28e-01 100.0% 85.0%
3928686 7579.1.1.14 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.54 42.0 2.80e-01 97.4% 20.7%
3280105 211.1.1.6 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_3 0.54 41.0 3.18e-01 100.0% 36.5%
4959571 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.54 48.0 3.37e-01 100.0% 31.8%
3948605 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.54 44.0 3.41e-01 94.7% 63.2%
3224838 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 46.0 3.06e-01 100.0% 23.9%
3238384 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 43.0 3.27e-01 100.0% 35.4%
3607605 2008.6.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.53 43.0 3.19e-01 90.8% 52.1%
3437883 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 38.0 3.69e-01 75.0% 72.9%
3798358 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.53 47.0 3.08e-01 100.0% 23.1%
3270679 2003.1.2.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.53 45.0 2.76e-01 94.7% 27.1%
3579770 316.1.1.28 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › TUTase 0.53 40.0 3.21e-01 100.0% 39.4%
None 0.52 42.0 2.84e-01 100.0% 21.9%
3781730 5.1.11.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Utp8_b_propeller 0.52 45.0 2.92e-01 98.7% 94.3%
4602537 2003.1.2.21 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Trp_halogenase 0.52 46.0 3.00e-01 98.7% 47.5%
None 0.52 41.0 2.81e-01 100.0% 22.2%
3872766 298.1.1.12 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Biliv-reduc_cat 0.51 42.0 3.68e-01 100.0% 57.6%
5011673 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 44.0 3.89e-01 100.0% 64.3%
None 0.51 39.0 3.90e-01 100.0% 83.7%
3932783 7579.1.1.14 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.50 38.0 2.64e-01 97.4% 21.4%
3589197 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.50 41.0 2.76e-01 92.1% 28.2%
4948708 207.7.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C 0.50 40.0 3.12e-01 100.0% 37.6%
D2 high residues 81-182
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25613.2 best DUF7941 33.8 3.50e-08 88.2% 28.4%