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MT662115.1__QMP23903.1__X__00029

Bact-Vir

MT662115.1__QMP23903.1__X__00029

Identity

Accession:
MT662115 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-91
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lvyE01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.63 52.0 3.94e-01 100.0% 43.6%
2f37A00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.54 39.0 2.65e-01 78.0% 41.3%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4193940 101.1.1.74 alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_3 0.51 39.0 3.82e-01 88.1% 98.5%
D2 high residues 95-142
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.76 66.0 4.19e-01 100.0% 20.4%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 66.0 5.17e-01 100.0% 52.4%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.75 60.0 3.47e-01 100.0% 10.6%
3aqoA02 3.30.1360.200 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.73 55.0 3.95e-01 83.3% 48.2%
2bolB02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 52.0 3.93e-01 83.3% 96.1%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 53.0 3.99e-01 100.0% 31.3%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 55.0 4.06e-01 100.0% 31.9%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.68 58.0 3.50e-01 100.0% 24.1%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 56.0 4.01e-01 100.0% 30.9%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.67 60.0 5.04e-01 100.0% 60.3%
6cz7A01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.67 47.0 4.36e-01 81.2% 58.1%
6nobA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.67 56.0 3.32e-01 100.0% 12.0%
2p3yA03 2.60.40.1610 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF1254 0.66 49.0 3.56e-01 83.3% 81.1%
4qqsB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 56.0 3.44e-01 100.0% 22.7%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 55.0 3.78e-01 100.0% 31.2%
2vxtI00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.65 56.0 3.94e-01 100.0% 64.1%
7jvhC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 55.0 3.33e-01 100.0% 17.4%
4gioA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 48.0 3.95e-01 87.5% 80.2%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.62 53.0 4.22e-01 100.0% 48.4%
5jciA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.62 46.0 3.66e-01 83.3% 41.6%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 48.0 3.93e-01 87.5% 52.2%
4izeA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 49.0 3.63e-01 97.9% 69.1%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.60 51.0 3.26e-01 100.0% 45.9%
7vqxR01 4.10.1240.10 Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain 0.60 41.0 3.48e-01 72.9% 45.2%
6i1cA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 52.0 3.97e-01 95.8% 83.3%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.60 43.0 3.64e-01 81.2% 44.2%
1gh2A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 52.0 3.96e-01 95.8% 84.1%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 46.0 4.20e-01 85.4% 98.4%
3h04A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 45.0 2.85e-01 85.4% 60.7%
3mfdA02 2.30.140.30 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › 0.59 51.0 4.18e-01 95.8% 80.5%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 48.0 3.07e-01 100.0% 16.5%
3luqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 42.0 3.32e-01 79.2% 37.7%
3bhcA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.59 50.0 3.71e-01 97.9% 37.4%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.58 51.0 3.97e-01 97.9% 75.5%
4j56E00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 51.0 3.90e-01 95.8% 83.8%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 52.0 3.64e-01 100.0% 31.4%
2e50B02 3.30.1120.90 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Nucleosome assembly protein 0.58 48.0 3.74e-01 95.8% 41.4%
3d6iA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 50.0 3.82e-01 97.9% 81.8%
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.57 41.0 3.02e-01 100.0% 27.9%
1w4vA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 50.0 3.82e-01 97.9% 80.9%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 46.0 3.99e-01 93.8% 79.5%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 49.0 3.11e-01 100.0% 25.4%
4gicA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.56 40.0 2.64e-01 79.2% 66.5%
3emxA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 49.0 3.67e-01 100.0% 82.3%
4gc1A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.56 44.0 3.64e-01 95.8% 92.1%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 48.0 3.95e-01 97.9% 55.7%
2lrcA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 49.0 3.73e-01 97.9% 79.6%
3qdnA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 48.0 3.67e-01 97.9% 78.8%
8eilD01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.55 45.0 3.19e-01 97.9% 48.8%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 3.46e-01 100.0% 44.0%
2nbsA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 47.0 3.56e-01 97.9% 75.0%
7obmA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 43.0 2.81e-01 95.8% 41.8%
1thxA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 46.0 3.57e-01 95.8% 82.4%
2l6cA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 47.0 3.71e-01 100.0% 83.7%
6g62A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 47.0 3.53e-01 97.9% 80.9%
2laeA00 3.30.310.170 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC 0.54 42.0 3.38e-01 100.0% 50.0%
5yk4A04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.53 39.0 2.89e-01 100.0% 29.4%
3bwxA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 42.0 2.70e-01 97.9% 34.0%
4s39A02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.52 46.0 3.49e-01 100.0% 70.7%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953440 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.78 70.0 4.37e-01 100.0% 19.6%
3617732 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.75 65.0 3.78e-01 100.0% 11.7%
3805475 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.73 62.0 3.79e-01 100.0% 21.5%
2720803 5.1.4.338 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28639 0.73 64.0 4.52e-01 100.0% 34.7%
3794652 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.73 65.0 4.26e-01 100.0% 24.5%
4545039 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 64.0 5.66e-01 100.0% 68.6%
5030911 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 60.0 4.95e-01 91.7% 53.0%
3993869 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.72 64.0 4.20e-01 100.0% 25.1%
4950045 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.71 65.0 5.29e-01 100.0% 78.8%
4046583 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.71 55.0 4.12e-01 100.0% 33.1%
4096795 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.71 49.0 4.67e-01 72.9% 69.1%
4944962 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.69 61.0 4.80e-01 100.0% 51.0%
4606244 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.69 48.0 4.60e-01 75.0% 63.6%
3785654 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.69 60.0 3.41e-01 100.0% 15.9%
3475901 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.68 48.0 4.04e-01 79.2% 98.9%
3461499 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.67 60.0 4.43e-01 97.9% 45.8%
1298711 9.1.1.13 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › ZinT 0.67 57.0 3.88e-01 100.0% 29.5%
3432857 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.67 59.0 4.28e-01 100.0% 37.8%
1758198 809.1.1.3 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF3862 0.67 60.0 5.06e-01 100.0% 61.0%
4010689 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.67 60.0 4.64e-01 100.0% 47.0%
4167251 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.67 44.0 4.39e-01 72.9% 66.0%
3611678 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.66 56.0 3.89e-01 97.9% 46.5%
5018023 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.66 50.0 3.61e-01 83.3% 31.1%
3967282 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.65 46.0 3.61e-01 77.1% 38.1%
3284646 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.63 55.0 3.48e-01 100.0% 20.8%
3201714 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 53.0 5.10e-01 95.8% 89.1%
3784711 59.1.3.2 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_polI_A34 0.62 45.0 3.42e-01 81.2% 44.6%
5059781 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.61 53.0 3.85e-01 95.8% 84.0%
3479988 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 50.0 3.45e-01 100.0% 29.5%
5049978 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 47.0 3.28e-01 93.8% 31.0%
2417755 10.12.1.13 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin 0.58 49.0 3.61e-01 100.0% 81.6%
3630101 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.58 47.0 2.84e-01 97.9% 28.7%
4683313 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.57 43.0 3.33e-01 85.4% 55.8%
3938676 5090.1.1.8 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.57 45.0 2.71e-01 93.8% 45.6%
3395630 7579.1.1.95 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Hydrolase_4 0.56 46.0 2.80e-01 100.0% 27.6%
3514681 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.55 46.0 4.35e-01 97.9% 78.3%
3976669 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.55 44.0 2.75e-01 97.9% 31.5%
3175469 2485.1.1.87 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N 0.55 47.0 3.62e-01 95.8% 81.8%
4944362 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.55 45.0 2.89e-01 97.9% 37.7%
401152 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.54 43.0 2.83e-01 95.8% 35.1%
3523439 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.54 44.0 2.71e-01 100.0% 29.3%
3668111 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.53 42.0 2.60e-01 100.0% 27.4%
4182599 223.2.1.20 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.52 41.0 2.96e-01 91.7% 29.0%
1891870 3794.1.2.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.52 41.0 3.62e-01 97.9% 57.1%
3740784 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 44.0 3.71e-01 100.0% 75.3%