←Back to structures

MT663719.1__QMV47892.1__X__00056

Bact-Vir

MT663719.1__QMV47892.1__X__00056

Identity

Accession:
MT663719 ↗
Kingdom:
phage

Quality

75.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Loughboroughvirus› Salmonella_phage_S144

TaxID: 2759179

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-92
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 51.0 4.66e-01 100.0% 62.4%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 51.0 4.63e-01 100.0% 63.6%
2cayB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 54.0 4.64e-01 98.8% 58.0%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 43.0 4.54e-01 74.1% 80.0%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 40.0 4.32e-01 95.1% 77.6%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 50.0 4.49e-01 100.0% 61.2%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.62 55.0 4.60e-01 100.0% 58.9%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 50.0 5.00e-01 100.0% 86.7%
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 44.0 3.38e-01 74.1% 52.7%
2cy2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 44.0 3.48e-01 75.3% 48.9%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 41.0 4.31e-01 92.6% 77.0%
1nnvA01 3.10.450.140 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative 0.61 40.0 3.77e-01 81.5% 55.0%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 4.34e-01 100.0% 58.1%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 44.0 3.92e-01 100.0% 52.4%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.60 53.0 4.54e-01 100.0% 79.5%
4ioyX01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.59 52.0 4.52e-01 100.0% 78.9%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.59 42.0 2.97e-01 75.3% 94.5%
5gi7A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 43.0 3.23e-01 77.8% 57.1%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 45.0 4.39e-01 84.0% 84.1%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 36.0 3.55e-01 92.6% 57.6%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 36.0 3.97e-01 92.6% 85.5%
1eqnB01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.56 41.0 3.60e-01 79.0% 81.7%
4edgA01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.56 42.0 3.59e-01 81.5% 79.1%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 4.17e-01 100.0% 64.5%
2ft0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 39.0 2.93e-01 75.3% 36.9%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 4.21e-01 98.8% 68.6%
2au3A02 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.54 41.0 3.57e-01 81.5% 81.1%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.53 36.0 3.67e-01 100.0% 69.9%
3au0A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 2.98e-01 71.6% 69.1%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 36.0 3.85e-01 100.0% 86.6%
5c82A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 38.0 3.00e-01 76.5% 47.6%
1xe4A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 37.0 2.96e-01 75.3% 39.0%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 3.98e-01 100.0% 71.8%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.52 44.0 3.55e-01 100.0% 97.7%
2dy7A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 39.0 3.92e-01 82.7% 98.8%
4boqA00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 37.0 2.96e-01 77.8% 92.0%
3htrA00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.51 35.0 3.38e-01 91.4% 60.2%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 44.0 3.41e-01 97.5% 76.3%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 44.0 3.37e-01 96.3% 75.5%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 38.0 4.01e-01 90.1% 100.0%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 38.0 3.19e-01 80.2% 60.9%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3270836 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.68 50.0 4.47e-01 100.0% 54.8%
4147965 2484.1.1.36 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.68 47.0 3.28e-01 71.6% 55.6%
3719596 77.1.1.3 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7 0.67 48.0 3.73e-01 74.1% 98.2%
3275009 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.66 51.0 4.27e-01 100.0% 47.6%
3478706 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.66 53.0 4.30e-01 100.0% 46.7%
3176453 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.66 52.0 4.34e-01 100.0% 49.3%
3233725 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.65 52.0 4.15e-01 100.0% 43.8%
3529648 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.65 51.0 4.26e-01 100.0% 49.3%
3789025 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.64 51.0 4.28e-01 100.0% 51.1%
638 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.63 43.0 4.54e-01 74.1% 80.0%
3625596 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 51.0 5.21e-01 100.0% 91.3%
4025181 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.62 51.0 4.65e-01 100.0% 66.4%
5031433 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 49.0 4.61e-01 100.0% 71.0%
3441981 220.1.1.187 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.62 53.0 4.27e-01 97.5% 53.3%
3785687 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.61 50.0 4.52e-01 100.0% 64.3%
3651563 220.1.1.181 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_ULP 0.61 54.0 4.68e-01 100.0% 69.6%
3452440 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 51.0 4.59e-01 100.0% 67.0%
3803797 220.1.1.181 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_ULP 0.60 53.0 4.71e-01 100.0% 70.8%
3884809 220.1.1.18 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PTB 0.59 49.0 4.03e-01 100.0% 48.4%
4976139 3209.1.1.0 ↗ a+b two layers › RPL28 › RPL28 › RPL28 0.59 41.0 3.43e-01 100.0% 40.7%
3193401 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 43.0 3.30e-01 76.5% 53.7%
3511356 4056.1.1.1 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.58 51.0 4.73e-01 98.8% 96.2%
4019656 220.1.1.211 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7612 0.58 47.0 4.10e-01 100.0% 55.6%
3589974 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 51.0 4.27e-01 100.0% 61.4%
3639482 220.1.1.211 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7612 0.58 49.0 4.16e-01 100.0% 55.7%
4494959 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 41.0 3.44e-01 75.3% 47.9%
3629171 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.56 50.0 4.13e-01 100.0% 56.6%
3573769 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 3.94e-01 100.0% 55.6%
3628965 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.56 49.0 3.95e-01 100.0% 77.6%
3487225 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 4.13e-01 100.0% 59.3%
3277493 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 47.0 4.32e-01 98.8% 70.9%
3394747 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.55 37.0 3.22e-01 77.8% 44.8%
3475430 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 3.86e-01 100.0% 51.9%
4020575 12.1.1.26 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_79C 0.52 38.0 3.39e-01 77.8% 98.2%
3609368 77.1.1.3 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7 0.51 41.0 2.96e-01 84.0% 33.8%
3635423 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.51 45.0 3.50e-01 100.0% 57.8%
3350511 844.1.1.6 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › GRDP_C 0.51 40.0 3.12e-01 86.4% 94.7%
3716765 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 42.0 2.50e-01 87.7% 70.5%
3652288 145.1.1.50 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › Kelch_1 0.51 38.0 2.56e-01 85.2% 20.6%
3713034 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 39.0 2.46e-01 81.5% 20.5%
3229482 71.1.1.19 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25898 0.51 39.0 2.98e-01 85.2% 78.0%
D2 high residues 96-150
PDB
Domain cluster: rep: MK770411.1__QDH45179.1__X__00073__D11-64