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MT700412.1__QNI20408.1__X__00054

Bact-Vir

MT700412.1__QNI20408.1__X__00054

Identity

Accession:
MT700412 ↗
Kingdom:
phage

Quality

92.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ehrlichviridae› Suttonboningtonvirus› Bacillus_phage_1_ICo-2020

TaxID: 2759272

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-61
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.74 42.0 4.37e-01 100.0% 59.6%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.71 50.0 4.65e-01 100.0% 59.2%
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.70 40.0 2.38e-01 98.3% 7.1%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 5.41e-01 95.0% 91.8%
3bjsA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.67 48.0 3.93e-01 78.3% 69.2%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.67 46.0 4.93e-01 100.0% 88.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 4.74e-01 98.3% 71.2%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 4.89e-01 100.0% 74.2%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.64 45.0 4.02e-01 98.3% 51.7%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.63 41.0 4.47e-01 96.7% 87.0%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.91e-01 98.3% 94.5%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.34e-01 100.0% 69.6%
2mvzA00 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.61 50.0 3.96e-01 100.0% 97.9%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 4.69e-01 100.0% 87.5%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.31e-01 93.3% 79.7%
3gr0D01 3.30.70.1780 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 36.0 4.14e-01 90.0% 87.8%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 41.0 3.56e-01 100.0% 46.9%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 40.0 3.22e-01 75.0% 78.5%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 43.0 3.62e-01 100.0% 45.9%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 43.0 3.49e-01 100.0% 40.2%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 44.0 3.86e-01 100.0% 55.2%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 41.0 3.34e-01 100.0% 41.2%
2nqlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 47.0 3.52e-01 100.0% 67.9%
4j2gA00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.54 43.0 3.03e-01 85.0% 90.6%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.18e-01 100.0% 32.5%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 37.0 2.80e-01 71.7% 78.9%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.18e-01 100.0% 35.4%
2fr5A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 42.0 3.29e-01 100.0% 39.0%
4oxiA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.54 41.0 2.53e-01 86.7% 55.3%
1cttA02 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 44.0 3.55e-01 100.0% 47.8%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 46.0 3.89e-01 100.0% 58.7%
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.53 40.0 3.72e-01 98.3% 65.4%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.53 37.0 3.55e-01 78.3% 64.3%
2xe4A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 38.0 2.34e-01 76.7% 82.1%
4bq2D01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.52 43.0 3.20e-01 100.0% 42.3%
2wyqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 44.0 4.12e-01 98.3% 85.7%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 40.0 4.19e-01 93.3% 100.0%
1wdiA02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.50 43.0 4.10e-01 98.3% 98.6%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3987692 822.3.1.1 ↗ a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.79 55.0 5.24e-01 100.0% 62.9%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.76 66.0 6.21e-01 100.0% 96.0%
3400462 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.74 47.0 4.83e-01 100.0% 67.2%
153859 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.74 42.0 4.37e-01 100.0% 59.6%
4158495 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.71 53.0 4.69e-01 100.0% 54.4%
4007508 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.70 46.0 4.95e-01 100.0% 82.0%
224066 822.3.1.1 ↗ a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.70 49.0 4.57e-01 100.0% 58.4%
3400250 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.70 41.0 4.42e-01 100.0% 70.0%
4004704 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.69 46.0 5.10e-01 100.0% 91.1%
3968122 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.69 45.0 5.06e-01 100.0% 91.1%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.69 46.0 5.12e-01 100.0% 93.3%
4009311 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.68 47.0 4.64e-01 100.0% 67.7%
4280097 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 48.0 4.84e-01 98.3% 75.0%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.67 48.0 5.19e-01 100.0% 92.0%
4463006 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.67 45.0 5.02e-01 98.3% 93.3%
3289401 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.63 47.0 3.67e-01 100.0% 36.9%
3883725 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.45e-01 100.0% 97.4%
3250477 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 39.0 3.13e-01 88.3% 31.9%
4970434 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.60 45.0 3.89e-01 100.0% 52.2%
3519361 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.60 46.0 3.08e-01 85.0% 88.6%
3385918 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.60 40.0 2.42e-01 70.0% 89.0%
3594014 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.59 45.0 3.04e-01 100.0% 20.8%
3781 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.59 52.0 3.66e-01 100.0% 60.0%
3958896 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.59 40.0 4.09e-01 98.3% 75.0%
4355655 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.58 47.0 3.90e-01 100.0% 97.6%
3695717 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.43e-01 98.3% 78.8%
150973 4967.1.1.5 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RdRP_3 0.56 48.0 3.33e-01 98.3% 52.3%
3198542 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 43.0 2.82e-01 98.3% 19.2%
3600035 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 41.0 4.03e-01 81.7% 96.9%
3930427 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.55 41.0 4.03e-01 98.3% 76.9%
4017526 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.54 39.0 2.75e-01 76.7% 73.3%
3605540 2.1.1.65 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB_2 0.54 39.0 3.60e-01 81.7% 75.0%
3596155 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 36.0 2.98e-01 70.0% 98.3%
3970120 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.53 40.0 2.89e-01 83.3% 34.4%
4028716 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.53 44.0 3.41e-01 93.3% 59.3%
3988834 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.52 39.0 2.37e-01 80.0% 69.0%
2070372 304.28.1.5 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › NPC1_MLD 0.52 42.0 2.83e-01 93.3% 46.2%
5062332 2003.1.1.386 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_C 0.52 37.0 2.28e-01 76.7% 90.4%
4929347 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 40.0 4.19e-01 93.3% 98.2%
3258059 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.51 42.0 3.98e-01 95.0% 90.7%
None — 0.51 38.0 2.40e-01 85.0% 24.2%
5045741 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 41.0 4.06e-01 91.7% 95.4%
5052968 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.50 41.0 2.65e-01 96.7% 24.9%