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MT701586.1__QPB08671.1__CPT_Mica_059__00058

Bact-Vir

MT701586.1__QPB08671.1__CPT_Mica_059__00058

Identity

Accession:
MT701586 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Micavirus› Burkholderia_phage_Mica

TaxID: 2767579

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-44
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vecA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 49.0 3.70e-01 100.0% 32.0%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.66 55.0 3.72e-01 100.0% 35.8%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.66 54.0 4.58e-01 100.0% 97.5%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 52.0 4.35e-01 97.7% 95.4%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 52.0 4.13e-01 95.3% 82.1%
2llzA01 3.30.70.2360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 52.0 4.21e-01 97.7% 88.9%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 46.0 3.95e-01 81.4% 77.9%
3m3gA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.64 53.0 3.96e-01 100.0% 42.5%
2hdeA01 3.10.20.550 Alpha Beta › Roll › Ubiquitin-like (UB roll) › ASAP complex, SAP18 subunit 0.63 50.0 3.82e-01 100.0% 86.2%
4ehiA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.62 51.0 3.62e-01 100.0% 28.2%
3rojA02 3.40.190.90 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.61 52.0 3.52e-01 97.7% 51.5%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.61 50.0 3.63e-01 100.0% 49.3%
3cvzB01 3.30.1490.290 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 0.60 51.0 3.97e-01 100.0% 54.5%
3prbA01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 51.0 3.90e-01 100.0% 85.7%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.60 48.0 4.08e-01 100.0% 65.9%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 42.0 3.22e-01 79.1% 33.1%
1zczA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.59 46.0 3.62e-01 100.0% 37.6%
1zczA03 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.59 49.0 3.65e-01 100.0% 76.4%
1d2oA01 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.59 49.0 3.76e-01 100.0% 42.1%
4rz7A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 47.0 3.40e-01 100.0% 31.4%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 50.0 3.80e-01 100.0% 63.9%
5e16A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 46.0 3.26e-01 100.0% 27.5%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 48.0 3.54e-01 100.0% 33.6%
4myjA04 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 45.0 3.27e-01 100.0% 29.5%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.58 48.0 3.46e-01 100.0% 48.2%
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.63e-01 100.0% 47.4%
3fmwC03 3.40.30.120 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.57 43.0 3.28e-01 86.0% 59.6%
3arxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.42e-01 100.0% 36.0%
3o1lB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 44.0 3.76e-01 100.0% 92.0%
1v8hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 3.75e-01 100.0% 41.5%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.71e-01 100.0% 46.2%
6grqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.80e-01 100.0% 51.1%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 46.0 3.58e-01 100.0% 41.9%
3cu7A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 47.0 3.60e-01 100.0% 41.5%
1ollA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.67e-01 100.0% 48.4%
1g6gB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 47.0 3.46e-01 100.0% 93.5%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.18e-01 100.0% 97.8%
4ggmX02 3.40.140.80 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain 0.54 43.0 3.19e-01 100.0% 31.3%
4gb7A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 44.0 2.64e-01 95.3% 54.4%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.67e-01 100.0% 50.6%
4hqsA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 37.0 2.70e-01 76.7% 23.7%
1z1dB00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.54 42.0 3.19e-01 100.0% 52.7%
2dmhA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 43.0 3.18e-01 100.0% 89.3%
2okxA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 46.0 3.10e-01 100.0% 28.0%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.12e-01 100.0% 53.2%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.33e-01 100.0% 44.3%
2q3xA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 43.0 3.10e-01 100.0% 31.7%
4jxuA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.52 40.0 2.95e-01 88.4% 67.4%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.52 38.0 3.56e-01 100.0% 62.3%
2e56A00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.03e-01 100.0% 41.7%
2xbzA00 2.60.40.2380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.05e-01 100.0% 32.6%
1iw7D11 3.30.60.280 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.51 41.0 4.11e-01 97.7% 95.5%
1vcaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.23e-01 100.0% 53.6%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4962335 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.86 79.0 6.79e-01 100.0% 76.9%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.85 75.0 7.16e-01 100.0% 92.0%
4965440 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.77 53.0 5.49e-01 100.0% 77.5%
4011630 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.74 50.0 5.31e-01 100.0% 81.6%
5008037 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.68 47.0 3.38e-01 72.1% 92.0%
3414008 221.1.1.51 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 0.67 51.0 4.11e-01 93.0% 91.0%
4186857 4012.1.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.66 48.0 4.92e-01 100.0% 92.5%
2080145 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.65 52.0 4.26e-01 97.7% 89.2%
3219557 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 54.0 4.92e-01 100.0% 83.3%
4524847 329.1.1.1 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.64 46.0 3.27e-01 76.7% 73.1%
4072109 2492.1.1.5 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas 0.64 53.0 3.75e-01 100.0% 28.4%
5003527 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.64 53.0 3.78e-01 100.0% 31.3%
3911204 382.1.1.16 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.61 47.0 4.13e-01 100.0% 54.7%
1155554 2492.1.1.5 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas 0.61 50.0 3.44e-01 100.0% 24.7%
5049343 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.60 44.0 3.17e-01 81.4% 97.8%
1002416 2492.1.1.5 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas 0.59 47.0 3.38e-01 100.0% 27.6%
5010143 11.9.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH 0.59 50.0 3.29e-01 100.0% 27.6%
3907235 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.58 48.0 3.09e-01 100.0% 29.8%
3778406 11.1.1.946 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2, Ig_3 0.57 46.0 3.11e-01 100.0% 23.7%
4992535 11.1.1.163 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BsuPI 0.57 48.0 3.62e-01 100.0% 49.1%
3856234 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.56 46.0 2.96e-01 100.0% 19.6%
3738773 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.56 46.0 4.29e-01 97.7% 74.5%
3776000 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.56 45.0 3.69e-01 100.0% 45.3%
3924084 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 43.0 3.55e-01 100.0% 98.0%
3701633 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 41.0 3.55e-01 93.0% 96.5%
5005349 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 47.0 2.71e-01 100.0% 10.9%
3976564 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 46.0 3.25e-01 100.0% 30.0%
3249186 221.7.1.3 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.55 48.0 3.51e-01 100.0% 44.3%
4947339 5103.1.1.0 ↗ a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 0.55 42.0 3.30e-01 88.4% 60.0%
3881786 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.55 46.0 3.61e-01 100.0% 48.0%
5083953 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.55 45.0 3.80e-01 100.0% 78.8%
3307645 221.7.1.3 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.54 48.0 3.45e-01 100.0% 42.5%
3920661 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.54 44.0 3.47e-01 100.0% 45.7%
3756439 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.16e-01 100.0% 31.4%
5048741 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 40.0 3.05e-01 79.1% 89.1%
3213885 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.54 45.0 3.48e-01 100.0% 61.0%
5000280 5103.1.1.0 ↗ a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 0.54 42.0 3.39e-01 93.0% 64.0%
3244813 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.54 46.0 3.26e-01 100.0% 43.0%
4976238 11.1.1.32 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Desulfoferrodox 0.53 45.0 3.34e-01 100.0% 37.0%
3698362 11.1.1.1046 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28431 0.53 42.0 3.12e-01 100.0% 55.6%
4296472 329.1.1.1 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.52 39.0 2.72e-01 83.7% 73.3%
3405854 221.7.1.3 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.52 45.0 3.48e-01 100.0% 45.0%
4388548 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.52 43.0 2.50e-01 100.0% 12.8%
3590615 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.52 41.0 2.56e-01 95.3% 67.8%
3696874 7508.1.1.0 ↗ a/b three-layered sandwiches › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain 0.51 36.0 2.32e-01 76.7% 64.4%
3888595 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.50 39.0 3.04e-01 100.0% 40.8%