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MT701590.1__QPB09285.1__CPT_Miami_190__00190

Bact-Vir

MT701590.1__QPB09285.1__CPT_Miami_190__00190

Identity

Accession:
MT701590 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Miamivirus› Klebsiella_phage_Miami

TaxID: 2767581

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-98
PDB
Domain cluster: rep: MN871446.1__UKS71896.1__KpLz245_0300__00030__D7-97
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b04A02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.72 65.0 6.35e-01 98.9% 92.9%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.71 49.0 5.60e-01 82.6% 100.0%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.69 61.0 6.06e-01 97.8% 95.8%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.69 46.0 4.31e-01 80.4% 56.2%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.68 50.0 4.60e-01 79.3% 77.2%
6p3xB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.65 46.0 3.77e-01 75.0% 91.0%
3ng0A02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.62 52.0 3.54e-01 92.4% 75.1%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.62 46.0 4.07e-01 95.7% 54.1%
1m4jA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 42.0 3.73e-01 78.3% 48.9%
7bi2A02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.60 51.0 4.54e-01 96.7% 64.4%
8ezmH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 54.0 5.07e-01 98.9% 92.9%
3cu7A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.60 53.0 5.10e-01 98.9% 88.7%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.59 43.0 4.00e-01 77.2% 65.5%
1ypzF01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 53.0 4.81e-01 98.9% 87.8%
5d2lE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 53.0 5.04e-01 98.9% 91.7%
4trkA00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.58 51.0 3.84e-01 100.0% 74.0%
6mjjC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 52.0 4.85e-01 98.9% 90.4%
3b2dC00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 51.0 4.52e-01 100.0% 92.1%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 51.0 4.05e-01 100.0% 79.1%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.57 42.0 3.58e-01 78.3% 49.3%
6ovnB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 49.0 4.57e-01 98.9% 90.6%
3o4lD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 49.0 4.75e-01 100.0% 91.3%
8shiI01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 49.0 4.76e-01 100.0% 96.2%
1zq7A01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.55 48.0 4.37e-01 100.0% 81.1%
2q3xA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 47.0 4.18e-01 98.9% 77.5%
1hw7A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.55 45.0 3.73e-01 92.4% 65.3%
4r9pA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 48.0 3.72e-01 100.0% 80.5%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 42.0 4.25e-01 85.9% 90.5%
2yrbA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 46.0 4.11e-01 96.7% 65.2%
3o5yB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 47.0 4.11e-01 100.0% 97.3%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 4.50e-01 98.9% 86.5%
2y24A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 38.0 3.69e-01 77.2% 76.6%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.53 47.0 4.52e-01 100.0% 87.7%
3kl0D01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 38.0 3.71e-01 78.3% 76.4%
2vmhA00 2.60.120.1060 Mainly Beta › Sandwich › Jelly Rolls › NPCBM/NEW2 domain 0.52 45.0 3.96e-01 100.0% 67.3%
6p58A00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 46.0 3.95e-01 100.0% 96.0%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 39.0 3.94e-01 82.6% 97.9%
5df7A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 44.0 3.10e-01 100.0% 95.9%
6uv8A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 45.0 3.69e-01 100.0% 89.9%
7lscA01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 45.0 3.89e-01 100.0% 96.6%
4bwiB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 44.0 3.58e-01 100.0% 82.3%
4u3tB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 44.0 3.14e-01 100.0% 94.6%
3gqqA00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.51 44.0 3.69e-01 98.9% 67.7%
1k25B02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 44.0 3.15e-01 100.0% 93.7%
5h4eA01 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.50 43.0 3.32e-01 100.0% 58.0%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.50 43.0 4.10e-01 97.8% 82.3%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1937092 1137.1.1.1 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.68 46.0 4.31e-01 80.4% 56.2%
185296 862.1.1.4 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase 0.65 57.0 4.48e-01 98.9% 73.4%
3174835 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.64 49.0 4.23e-01 93.5% 52.4%
5005349 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 3.43e-01 100.0% 18.3%
3892240 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 49.0 4.85e-01 96.7% 84.2%
3929435 11.1.4.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 0.61 50.0 4.75e-01 92.4% 75.5%
3633596 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 49.0 4.77e-01 100.0% 80.0%
3492374 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.60 48.0 4.34e-01 96.7% 63.2%
4942471 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 54.0 4.98e-01 98.9% 87.8%
3934697 11.2.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI3K_C2 0.59 52.0 3.76e-01 96.7% 45.5%
3938319 11.2.1.22 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › CC2D2AN-C2 0.59 51.0 4.16e-01 96.7% 77.7%
3576457 11.2.1.22 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › CC2D2AN-C2 0.58 46.0 4.09e-01 84.8% 88.1%
3418466 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.58 50.0 4.16e-01 93.5% 59.4%
3996685 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.58 41.0 3.59e-01 85.9% 48.9%
5038654 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 4.68e-01 81.5% 96.2%
1106820 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.57 42.0 3.58e-01 78.3% 49.3%
3721376 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.57 49.0 4.24e-01 93.5% 66.4%
3274147 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.57 51.0 4.26e-01 100.0% 84.4%
3698238 11.1.1.644 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.57 50.0 4.48e-01 100.0% 91.1%
3397203 10.2.1.39 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monoox_C 0.57 50.0 3.76e-01 100.0% 88.9%
4022623 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.57 49.0 3.95e-01 93.5% 65.9%
3857272 10.2.1.39 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monoox_C 0.56 49.0 3.81e-01 100.0% 89.5%
3203898 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 50.0 4.25e-01 96.7% 71.0%
3233104 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.56 47.0 3.98e-01 96.7% 55.5%
3916137 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.56 45.0 3.77e-01 87.0% 85.8%
3491223 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.55 49.0 4.34e-01 100.0% 100.0%
3698191 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 48.0 3.91e-01 96.7% 72.0%
3890583 11.2.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2-C2_1 0.55 47.0 3.88e-01 94.6% 54.5%
5038145 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.55 41.0 3.71e-01 79.3% 72.6%
4234325 10.32.1.18 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.54 47.0 3.95e-01 100.0% 86.7%
4660009 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.54 43.0 3.00e-01 89.1% 93.9%
3280283 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.53 45.0 3.05e-01 94.6% 90.8%
3483645 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.53 39.0 4.19e-01 78.3% 100.0%
3954895 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.53 44.0 3.04e-01 95.7% 93.6%
2704186 10.32.1.30 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › NPCBM 0.53 47.0 4.06e-01 100.0% 94.5%
3638202 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.53 46.0 3.47e-01 97.8% 73.9%
4987451 605.1.1.359 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GAF_2 0.52 45.0 3.34e-01 100.0% 59.3%
3721207 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.52 44.0 3.19e-01 95.7% 59.6%
3477854 3680.1.1.1 ↗ a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C 0.52 35.0 3.22e-01 100.0% 52.0%
4013989 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.51 44.0 3.26e-01 95.7% 60.6%
3935013 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 43.0 3.37e-01 97.8% 80.4%
3953538 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.50 43.0 2.95e-01 100.0% 90.4%