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MT701593.1__QPB09586.1__CPT_Sycamore_046__00046
Bact-VirMT701593.1__QPB09586.1__CPT_Sycamore_046__00046
Identity
- Accession:
- MT701593 ↗
- Kingdom:
- phage
Quality
80.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Colingsworthviridae›
Sycamorevirus›
Streptomyces_phage_Sycamore
TaxID: 2767589
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-54
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xzm500 | 3.30.1740.20 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Ribosomal protein S26 | 0.65 | 46.0 | 3.82e-01 | 76.9% | 69.4% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 43.0 | 3.89e-01 | 76.9% | 56.0% |
| 2zetC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 39.0 | 2.89e-01 | 76.9% | 25.5% |
| 2m6mA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 43.0 | 3.76e-01 | 82.7% | 53.0% |
| 1eyqA02 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.57 | 44.0 | 3.27e-01 | 90.4% | 35.2% |
| 5fb0C01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.57 | 40.0 | 3.86e-01 | 100.0% | 63.9% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.57 | 40.0 | 3.99e-01 | 76.9% | 70.9% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.56 | 42.0 | 3.86e-01 | 82.7% | 64.3% |
| 7yuiB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 40.0 | 3.46e-01 | 98.1% | 46.6% |
| 1t07A00 | 1.10.3880.10 | Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX | 0.54 | 39.0 | 3.49e-01 | 80.8% | 53.1% |
| 3goxA02 | 3.30.60.130 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.54 | 39.0 | 3.93e-01 | 82.7% | 81.5% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 41.0 | 3.96e-01 | 94.2% | 74.2% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 38.0 | 3.61e-01 | 76.9% | 71.4% |
| 4dolA01 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.53 | 44.0 | 3.30e-01 | 100.0% | 97.4% |
| 3fcmA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 43.0 | 3.10e-01 | 100.0% | 93.9% |
| 1dfuP00 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.52 | 36.0 | 3.11e-01 | 100.0% | 42.6% |
| 3nw0A03 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 36.0 | 3.52e-01 | 75.0% | 91.4% |
| 2cg7A01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.50 | 34.0 | 3.56e-01 | 88.5% | 80.4% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4466003 | 376.1.3.44 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva | 0.66 | 46.0 | 4.33e-01 | 80.8% | 60.0% |
| 5041606 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.65 | 45.0 | 4.21e-01 | 80.8% | 58.5% |
| 149887 | 813.1.1.1 ↗ | a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone | 0.64 | 54.0 | 3.70e-01 | 100.0% | 98.6% |
| 4940846 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.63 | 46.0 | 4.46e-01 | 78.8% | 78.0% |
| 4306719 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.62 | 43.0 | 4.15e-01 | 76.9% | 64.6% |
| 3846283 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.62 | 45.0 | 4.63e-01 | 82.7% | 84.0% |
| 3301384 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.61 | 43.0 | 4.24e-01 | 76.9% | 70.9% |
| 3277860 | 4.1.1.368 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3097_N | 0.61 | 44.0 | 4.10e-01 | 80.8% | 61.5% |
| 2727964 | 4.1.1.105 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5604 | 0.61 | 46.0 | 4.53e-01 | 86.5% | 81.4% |
| 3271441 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.60 | 45.0 | 4.45e-01 | 80.8% | 83.6% |
| 2035461 | 3380.1.1.1 ↗ | a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 | 0.60 | 42.0 | 4.15e-01 | 76.9% | 69.6% |
| 3468455 | 376.1.3.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ADD_ATRX | 0.59 | 40.0 | 4.41e-01 | 76.9% | 90.0% |
| 3908091 | 3380.1.1.0 ↗ | a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 | 0.59 | 38.0 | 3.98e-01 | 98.1% | 75.6% |
| 4977157 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.59 | 41.0 | 4.33e-01 | 76.9% | 84.4% |
| 4945344 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 47.0 | 2.91e-01 | 90.4% | 28.3% |
| 5004050 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 42.0 | 3.85e-01 | 82.7% | 58.6% |
| 3810891 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.57 | 40.0 | 3.53e-01 | 75.0% | 55.0% |
| 4029263 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.57 | 43.0 | 3.43e-01 | 84.6% | 53.3% |
| 4977206 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 40.0 | 3.91e-01 | 76.9% | 71.7% |
| 3566649 | 377.1.1.16 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS | 0.57 | 37.0 | 3.83e-01 | 98.1% | 75.6% |
| 5031996 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.56 | 40.0 | 3.99e-01 | 78.8% | 72.7% |
| 3250122 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.56 | 39.0 | 3.33e-01 | 76.9% | 40.0% |
| 4974669 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.56 | 38.0 | 3.27e-01 | 82.7% | 42.2% |
| 3728855 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 41.0 | 3.78e-01 | 86.5% | 68.0% |
| 3371338 | 377.1.1.12 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 | 0.55 | 39.0 | 2.97e-01 | 98.1% | 29.6% |
| 4937158 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 36.0 | 3.49e-01 | 71.2% | 70.0% |
| 4629735 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 39.0 | 3.71e-01 | 88.5% | 64.6% |
| 3219406 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 39.0 | 3.95e-01 | 86.5% | 84.0% |
| 3931577 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 40.0 | 2.60e-01 | 86.5% | 35.4% |
| 4380798 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.53 | 37.0 | 2.33e-01 | 82.7% | 12.3% |
| 5017637 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.53 | 37.0 | 3.71e-01 | 76.9% | 80.0% |
| 3585671 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.52 | 38.0 | 3.90e-01 | 84.6% | 98.0% |
| 3398775 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.52 | 34.0 | 3.56e-01 | 88.5% | 85.0% |
| 3557789 | 377.9.1.21 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › PHD | 0.52 | 33.0 | 3.43e-01 | 75.0% | 68.0% |
| 1145837 | 4.1.1.106 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ_3 | 0.52 | 39.0 | 3.38e-01 | 84.6% | 82.8% |
| 3624143 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.52 | 39.0 | 3.91e-01 | 96.2% | 85.5% |
| 3575262 | 206.1.1.72 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal | 0.51 | 38.0 | 2.37e-01 | 84.6% | 36.8% |
| 461497 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 36.0 | 2.70e-01 | 80.8% | 56.5% |
| 4009644 | 2008.1.1.160 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27151 | 0.51 | 41.0 | 3.02e-01 | 100.0% | 82.7% |
| 3998096 | 387.1.3.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like | 0.50 | 30.0 | 3.33e-01 | 92.3% | 80.0% |
| 3889517 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.50 | 34.0 | 3.29e-01 | 84.6% | 61.7% |
| 4976092 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 36.0 | 3.24e-01 | 82.7% | 57.8% |