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MT708545.1__QOV06124.1__CPT_Pasto_050__00049
Bact-VirMT708545.1__QOV06124.1__CPT_Pasto_050__00049
Identity
- Accession:
- MT708545 ↗
- Kingdom:
- phage
Quality
82.9
mean pLDDT
Taxonomy
TaxID: 2767575
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 195-304
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.70 | 41.0 | 4.01e-01 | 72.7% | 52.9% |
| 3oxfA05 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 43.0 | 5.02e-01 | 96.4% | 100.0% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.63 | 47.0 | 4.71e-01 | 77.3% | 99.1% |
| 3nqpA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 46.0 | 2.98e-01 | 75.5% | 58.0% |
| 1iygA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 45.0 | 4.26e-01 | 98.2% | 63.2% |
| 3fhnA03 | 1.10.357.100 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Dsl1p vesicle tethering complex, Tip20p subunit, domain C | 0.59 | 47.0 | 4.07e-01 | 85.5% | 92.0% |
| 2kuaA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.58 | 45.0 | 4.15e-01 | 84.5% | 70.2% |
| 1werA01 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.58 | 49.0 | 4.17e-01 | 90.0% | 100.0% |
| 2w53B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 44.0 | 3.85e-01 | 83.6% | 79.2% |
| 1u3dA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 39.0 | 3.66e-01 | 74.5% | 56.7% |
| 2d4uB00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.57 | 39.0 | 3.47e-01 | 70.0% | 67.1% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.56 | 44.0 | 4.54e-01 | 98.2% | 91.1% |
| 1e7uA05 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.56 | 47.0 | 3.93e-01 | 92.7% | 95.3% |
| 8sbeA02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.55 | 43.0 | 3.56e-01 | 81.8% | 68.4% |
| 1td6A01 | 1.20.1480.10 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 | 0.53 | 40.0 | 4.22e-01 | 79.1% | 95.1% |
| 7kb2B01 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.52 | 45.0 | 3.91e-01 | 96.4% | 68.4% |
| 2yvtA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.52 | 43.0 | 3.32e-01 | 90.9% | 41.4% |
| 2c12A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.51 | 36.0 | 3.48e-01 | 71.8% | 82.7% |
| 2w0gA00 | 1.20.58.610 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain | 0.51 | 43.0 | 4.09e-01 | 93.6% | 89.1% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3803781 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.74 | 54.0 | 4.30e-01 | 93.6% | 39.0% |
| 4013085 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.65 | 46.0 | 3.48e-01 | 71.8% | 93.8% |
| 3212403 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.64 | 44.0 | 3.42e-01 | 71.8% | 91.4% |
| 3516510 | 304.48.1.6 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A | 0.64 | 38.0 | 3.74e-01 | 80.9% | 54.6% |
| 3301471 | 5067.1.1.17 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › AtTam38 | 0.63 | 41.0 | 4.15e-01 | 81.8% | 65.5% |
| 3440538 | 109.4.1.91 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec10_HB | 0.62 | 53.0 | 4.08e-01 | 95.5% | 54.7% |
| 3304410 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.60 | 54.0 | 3.46e-01 | 96.4% | 22.7% |
| 5041293 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 35.0 | 3.90e-01 | 70.0% | 72.2% |
| 3824988 | 109.3.1.339 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Vps35 | 0.59 | 44.0 | 3.84e-01 | 91.8% | 50.9% |
| 4959752 | 3355.1.1.14 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Lactate_perm | 0.58 | 49.0 | 3.30e-01 | 97.3% | 92.7% |
| 3265995 | 109.3.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28996 | 0.57 | 49.0 | 4.28e-01 | 95.5% | 62.9% |
| 3965474 | 3355.1.1.8 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Na_H_antiporter | 0.56 | 50.0 | 3.38e-01 | 100.0% | 77.0% |
| 3596129 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 49.0 | 2.82e-01 | 100.0% | 60.8% |
| 3870187 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.56 | 44.0 | 3.42e-01 | 81.8% | 56.9% |
| 4025011 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.55 | 38.0 | 3.71e-01 | 70.0% | 85.8% |
| 3500405 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.55 | 44.0 | 3.57e-01 | 85.5% | 61.0% |
| 3929962 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.54 | 42.0 | 3.23e-01 | 82.7% | 97.3% |
| 3519477 | 551.1.1.0 ↗ | alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain | 0.52 | 44.0 | 4.12e-01 | 93.6% | 88.6% |
| 4022995 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 44.0 | 2.84e-01 | 95.5% | 18.6% |
| 3215664 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.52 | 44.0 | 3.55e-01 | 92.7% | 53.0% |
| 3226273 | 551.1.1.1 ↗ | alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › CDC37_M | 0.52 | 43.0 | 3.94e-01 | 93.6% | 82.0% |
| 3286362 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 40.0 | 3.30e-01 | 81.8% | 61.5% |
| 4960186 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.51 | 39.0 | 3.99e-01 | 89.1% | 81.8% |
| 4128543 | 551.1.1.1 ↗ | alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › CDC37_M | 0.51 | 43.0 | 3.89e-01 | 93.6% | 74.8% |
| 4068922 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.51 | 35.0 | 3.58e-01 | 70.9% | 97.1% |
| 4630306 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.50 | 40.0 | 2.76e-01 | 86.4% | 58.0% |
D2
medium
residues 84-194
Domain cluster:
representative
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tp3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.73 | 53.0 | 4.77e-01 | 74.8% | 63.5% |
| 1s2xA00 | 1.20.190.30 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › CAG pathogenicity island protein, CagZ | 0.67 | 55.0 | 4.70e-01 | 88.3% | 91.1% |
| 2nx4C00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.67 | 57.0 | 4.79e-01 | 92.8% | 71.7% |
| 3nz4B03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.64 | 43.0 | 4.49e-01 | 70.3% | 81.7% |
| 3gwlA00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.62 | 38.0 | 3.91e-01 | 81.1% | 63.2% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.62 | 43.0 | 4.94e-01 | 72.1% | 100.0% |
| 1t72A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.62 | 49.0 | 4.88e-01 | 86.5% | 97.4% |
| 3lbxB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 45.0 | 4.57e-01 | 76.6% | 99.1% |
| 1j1jA01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.61 | 45.0 | 4.25e-01 | 77.5% | 75.8% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.60 | 44.0 | 4.33e-01 | 74.8% | 75.0% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 46.0 | 4.69e-01 | 80.2% | 100.0% |
| 6tqpA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.60 | 39.0 | 3.69e-01 | 88.3% | 52.9% |
| 1jmwA00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.60 | 45.0 | 4.17e-01 | 79.3% | 76.0% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.60 | 46.0 | 4.41e-01 | 81.1% | 71.4% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 50.0 | 4.66e-01 | 90.1% | 89.7% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.59 | 40.0 | 4.59e-01 | 92.8% | 98.7% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.59 | 50.0 | 5.07e-01 | 91.0% | 100.0% |
| 3edvA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 53.0 | 4.50e-01 | 100.0% | 100.0% |
| 3pjaJ01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.59 | 45.0 | 4.30e-01 | 81.1% | 79.4% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.58 | 46.0 | 4.39e-01 | 86.5% | 89.6% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.58 | 45.0 | 4.81e-01 | 92.8% | 96.9% |
| 3qkyA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 47.0 | 3.64e-01 | 89.2% | 39.0% |
| 2ykgA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.58 | 49.0 | 4.68e-01 | 94.6% | 78.2% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.57 | 40.0 | 3.98e-01 | 74.8% | 69.0% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 42.0 | 4.24e-01 | 82.0% | 75.9% |
| 4djhA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 39.0 | 2.86e-01 | 70.3% | 70.7% |
| 1sziA02 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.56 | 43.0 | 4.05e-01 | 82.0% | 77.4% |
| 4hz4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 37.0 | 3.72e-01 | 75.7% | 66.1% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 40.0 | 3.73e-01 | 76.6% | 98.6% |
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.55 | 39.0 | 3.77e-01 | 73.0% | 77.6% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 38.0 | 3.79e-01 | 70.3% | 78.8% |
| 2a2fX02 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.55 | 47.0 | 4.49e-01 | 92.8% | 95.3% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.54 | 38.0 | 4.17e-01 | 73.0% | 97.8% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.54 | 42.0 | 3.80e-01 | 91.9% | 60.4% |
| 1hciA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 44.0 | 4.30e-01 | 91.0% | 96.8% |
| 4jioA01 | 1.20.120.560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain | 0.53 | 41.0 | 3.66e-01 | 82.0% | 90.7% |
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 45.0 | 4.40e-01 | 91.9% | 96.7% |
| 3fnbA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.53 | 39.0 | 3.88e-01 | 82.9% | 73.7% |
| 4etrB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 39.0 | 3.78e-01 | 74.8% | 98.4% |
| 1tqgA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.53 | 39.0 | 4.00e-01 | 79.3% | 81.0% |
| 3kfwX03 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 35.0 | 4.04e-01 | 73.9% | 98.7% |
| 4jhrB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 47.0 | 3.47e-01 | 99.1% | 85.8% |
| 2jbwA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.51 | 36.0 | 3.77e-01 | 78.4% | 78.6% |
| 3nkzA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.51 | 40.0 | 4.20e-01 | 83.8% | 100.0% |
| 1owlA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 36.0 | 3.54e-01 | 86.5% | 65.9% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 40.0 | 4.17e-01 | 86.5% | 100.0% |
| 2gw1A02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 40.0 | 2.89e-01 | 87.4% | 72.2% |
| 3wd6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 35.0 | 3.46e-01 | 70.3% | 72.9% |
| 4p63D00 | 3.40.910.10 | Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase | 0.50 | 38.0 | 2.75e-01 | 78.4% | 40.7% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3686422 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.80 | 56.0 | 5.82e-01 | 75.7% | 76.2% |
| 3731178 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.73 | 53.0 | 5.29e-01 | 87.4% | 73.0% |
| 3499218 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.71 | 40.0 | 4.02e-01 | 88.3% | 55.5% |
| 3991348 | 109.4.1.17 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin | 0.67 | 56.0 | 4.01e-01 | 92.8% | 34.4% |
| 4247950 | 4994.1.1.1 ↗ | alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507 | 0.66 | 52.0 | 5.54e-01 | 83.8% | 100.0% |
| 5061319 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.65 | 42.0 | 4.19e-01 | 75.7% | 63.5% |
| 4286404 | 3755.1.1.14 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › T3SSipB | 0.63 | 43.0 | 3.69e-01 | 70.3% | 78.9% |
| 3601109 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 55.0 | 3.66e-01 | 95.5% | 80.2% |
| 3236284 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.62 | 38.0 | 4.45e-01 | 71.2% | 85.0% |
| 3739427 | 109.4.1.37 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BRO1 | 0.62 | 52.0 | 3.68e-01 | 90.1% | 40.3% |
| 3779488 | 3755.4.1.69 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PF28341 | 0.62 | 50.0 | 4.16e-01 | 87.4% | 92.5% |
| 3614783 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 56.0 | 3.71e-01 | 98.2% | 76.8% |
| 3719058 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.62 | 45.0 | 4.99e-01 | 80.2% | 100.0% |
| 5012473 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.61 | 40.0 | 4.04e-01 | 99.1% | 66.4% |
| 3186209 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 45.0 | 4.13e-01 | 77.5% | 62.8% |
| 3486401 | 3807.1.1.0 ↗ | alpha bundles › Yersinia protein kinase A (YpkA) Rho-GTPase binding domain › Yersinia protein kinase A (YpkA) Rho-GTPase binding domain › Yersinia protein kinase A (YpkA) Rho-GTPase binding domain | 0.60 | 53.0 | 4.14e-01 | 93.7% | 82.2% |
| 3608116 | 5086.1.1.177 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › KIF9 | 0.60 | 37.0 | 3.45e-01 | 99.1% | 47.6% |
| 3917600 | 604.1.1.6 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_4 | 0.60 | 47.0 | 4.66e-01 | 84.7% | 95.0% |
| 3661792 | 109.4.1.37 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BRO1 | 0.59 | 49.0 | 3.48e-01 | 90.1% | 38.2% |
| 3557114 | 604.1.1.66 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_1st_PEPL | 0.59 | 43.0 | 4.32e-01 | 74.8% | 92.7% |
| 3599499 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.59 | 40.0 | 3.63e-01 | 100.0% | 51.3% |
| 2060764 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.59 | 49.0 | 4.70e-01 | 91.0% | 82.0% |
| 1268387 | 604.1.1.6 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_4 | 0.59 | 45.0 | 4.58e-01 | 80.2% | 98.2% |
| 5002083 | 1076.1.1.4 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › PrsW-protease | 0.59 | 46.0 | 4.18e-01 | 84.7% | 77.4% |
| 3857880 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.58 | 49.0 | 4.50e-01 | 91.0% | 90.3% |
| 3734712 | 604.3.1.11 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 | 0.58 | 52.0 | 3.87e-01 | 100.0% | 97.3% |
| 3884746 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 48.0 | 4.52e-01 | 90.1% | 97.0% |
| 3935017 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.58 | 41.0 | 4.68e-01 | 73.0% | 100.0% |
| 3586746 | 603.1.1.133 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF7799 | 0.58 | 42.0 | 4.11e-01 | 74.8% | 98.3% |
| 3201476 | 604.13.1.0 ↗ | alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like | 0.57 | 40.0 | 4.05e-01 | 73.9% | 79.1% |
| 3508235 | 109.4.1.1138 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SCAI | 0.57 | 41.0 | 4.30e-01 | 92.8% | 82.0% |
| 3815122 | 604.12.1.68 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF6857 | 0.57 | 47.0 | 4.06e-01 | 91.9% | 67.8% |
| 3425962 | 603.1.1.116 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27980 | 0.55 | 40.0 | 4.50e-01 | 84.7% | 100.0% |
| 3737920 | 1065.1.1.0 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain | 0.55 | 48.0 | 4.24e-01 | 99.1% | 86.5% |
| 3855780 | 604.1.1.66 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_1st_PEPL | 0.55 | 44.0 | 4.43e-01 | 85.6% | 97.4% |
| 4003320 | 109.4.1.37 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BRO1 | 0.55 | 47.0 | 3.62e-01 | 96.4% | 58.5% |
| 4087220 | 613.1.1.1 ↗ | alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c | 0.54 | 45.0 | 3.51e-01 | 88.3% | 51.1% |
| 4998672 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.54 | 41.0 | 4.48e-01 | 79.3% | 100.0% |
| 3407072 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.54 | 37.0 | 4.18e-01 | 85.6% | 100.0% |
| 3498862 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 45.0 | 4.63e-01 | 91.0% | 99.0% |
| 3469701 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.53 | 40.0 | 3.14e-01 | 100.0% | 38.2% |
| 3926031 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.53 | 37.0 | 3.97e-01 | 88.3% | 85.3% |
| 3398592 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 48.0 | 2.78e-01 | 97.3% | 16.4% |
| 3371460 | 604.5.1.7 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT | 0.52 | 46.0 | 3.61e-01 | 98.2% | 77.1% |
| 4472564 | 601.25.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical | 0.51 | 42.0 | 3.55e-01 | 91.9% | 82.0% |
| 3481121 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 43.0 | 4.19e-01 | 94.6% | 96.0% |
| 3924651 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.50 | 40.0 | 4.29e-01 | 98.2% | 100.0% |
D3
medium
residues 305-394
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.76 | 61.0 | 4.92e-01 | 84.4% | 61.5% |
| 3ofnY00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.71 | 54.0 | 4.99e-01 | 81.1% | 80.9% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 34.0 | 3.10e-01 | 84.4% | 36.8% |
| 1vw4T01 | 6.10.330.20 | Special › Helix non-globular › Monooxygenase › | 0.66 | 48.0 | 4.44e-01 | 75.6% | 89.3% |
| 3zojA00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.63 | 47.0 | 3.32e-01 | 77.8% | 77.6% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 43.0 | 3.55e-01 | 74.4% | 62.3% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.59 | 51.0 | 3.96e-01 | 92.2% | 60.7% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 50.0 | 4.90e-01 | 88.9% | 95.8% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.50 | 41.0 | 2.64e-01 | 86.7% | 63.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3403227 | 192.8.1.465 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CHD5 | 0.77 | 59.0 | 5.55e-01 | 85.6% | 66.4% |
| 3962942 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.76 | 63.0 | 5.30e-01 | 88.9% | 56.7% |
| 3195065 | 6155.1.1.6 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF2921 | 0.63 | 43.0 | 3.18e-01 | 71.1% | 41.3% |
| 3191400 | 3559.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med22 | 0.62 | 51.0 | 4.50e-01 | 87.8% | 63.1% |
| 3909247 | 192.8.1.378 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › BRINP | 0.57 | 40.0 | 3.50e-01 | 76.7% | 48.9% |
D4
medium
residues 561-636
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4cxfA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.71 | 54.0 | 5.23e-01 | 82.9% | 80.5% |
| 2i5uA00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.70 | 53.0 | 5.33e-01 | 80.3% | 84.4% |
| 4n06A02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.70 | 60.0 | 4.08e-01 | 93.4% | 48.9% |
| 3sykA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.70 | 58.0 | 5.51e-01 | 92.1% | 93.3% |
| 2cfoA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.67 | 45.0 | 5.10e-01 | 72.4% | 100.0% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.67 | 48.0 | 5.42e-01 | 85.5% | 100.0% |
| 1nxhA00 | 1.10.3070.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein MTH393 › EhaM-like | 0.65 | 52.0 | 4.44e-01 | 90.8% | 54.0% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 46.0 | 4.56e-01 | 77.6% | 79.5% |
| 3q2qA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.62 | 52.0 | 3.47e-01 | 93.4% | 42.0% |
| 1z2iA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.62 | 46.0 | 4.40e-01 | 86.8% | 66.7% |
| 3d8bB02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.61 | 50.0 | 4.91e-01 | 90.8% | 92.7% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.61 | 40.0 | 4.02e-01 | 76.3% | 64.6% |
| 4gh9A01 | 1.10.8.950 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain | 0.61 | 47.0 | 4.83e-01 | 90.8% | 91.4% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 49.0 | 4.69e-01 | 90.8% | 80.7% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.59 | 49.0 | 4.21e-01 | 92.1% | 100.0% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.59 | 42.0 | 4.30e-01 | 75.0% | 86.1% |
| 3uoeA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.59 | 44.0 | 4.30e-01 | 85.5% | 72.4% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 40.0 | 3.36e-01 | 71.1% | 81.4% |
| 1u5kA02 | 1.20.1440.120 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain | 0.57 | 43.0 | 3.67e-01 | 80.3% | 48.8% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.57 | 48.0 | 3.49e-01 | 100.0% | 58.0% |
| 3mgdB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 50.0 | 3.95e-01 | 97.4% | 95.4% |
| 4q6bA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 46.0 | 3.41e-01 | 92.1% | 83.1% |
| 2ywrA00 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.54 | 44.0 | 3.25e-01 | 90.8% | 98.6% |
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.54 | 38.0 | 3.40e-01 | 75.0% | 99.1% |
| 1jr8A00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.52 | 37.0 | 3.45e-01 | 97.4% | 56.2% |
| 3fvvA02 | 1.20.1440.100 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function | 0.52 | 36.0 | 3.67e-01 | 73.7% | 77.3% |
| 7t7kA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.51 | 43.0 | 3.84e-01 | 98.7% | 93.2% |
| 4ymuD00 | 1.10.3720.10 | Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like | 0.51 | 43.0 | 3.16e-01 | 94.7% | 73.5% |
| 7dl9A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.51 | 42.0 | 3.19e-01 | 92.1% | 84.0% |
| 1x4oA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.51 | 37.0 | 3.68e-01 | 76.3% | 80.8% |
| 2c41C01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 37.0 | 3.08e-01 | 80.3% | 59.7% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004958 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.84 | 59.0 | 6.92e-01 | 72.4% | 100.0% |
| 4961802 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.84 | 63.0 | 6.78e-01 | 78.9% | 90.8% |
| 4957947 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.80 | 56.0 | 6.48e-01 | 84.2% | 100.0% |
| 3571483 | 60.1.1.16 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › MTBP_C | 0.72 | 61.0 | 6.05e-01 | 90.8% | 89.9% |
| 3505645 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.72 | 55.0 | 5.95e-01 | 81.6% | 96.9% |
| 4341780 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.70 | 51.0 | 5.45e-01 | 96.1% | 92.3% |
| 4415082 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.67 | 54.0 | 5.14e-01 | 90.8% | 94.4% |
| 3752445 | 102.1.1.143 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › XTBD | 0.63 | 41.0 | 4.30e-01 | 82.9% | 73.5% |
| 5060163 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.63 | 46.0 | 4.93e-01 | 78.9% | 93.8% |
| 3413026 | 103.4.1.3 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Med15_N | 0.59 | 47.0 | 4.86e-01 | 98.7% | 95.7% |
| 3734404 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.57 | 40.0 | 3.96e-01 | 75.0% | 82.5% |
| 3250261 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.54 | 38.0 | 3.70e-01 | 77.6% | 76.7% |
| 4396592 | 7064.1.1.3 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › FUSC_2 | 0.54 | 41.0 | 3.31e-01 | 82.9% | 48.0% |
| 3673391 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.53 | 38.0 | 3.84e-01 | 80.3% | 86.3% |
| 5066728 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.52 | 38.0 | 3.77e-01 | 85.5% | 74.1% |
| 3212676 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.51 | 36.0 | 3.62e-01 | 75.0% | 76.9% |
| 3638639 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.51 | 37.0 | 3.48e-01 | 77.6% | 68.0% |
| 3814902 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.51 | 34.0 | 3.43e-01 | 76.3% | 68.0% |
| 4451187 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.51 | 39.0 | 4.11e-01 | 94.7% | 100.0% |
| 4861051 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.50 | 37.0 | 3.65e-01 | 80.3% | 85.2% |
D5
medium
residues 637-798
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yy7A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.66 | 35.0 | 4.36e-01 | 84.6% | 80.0% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.66 | 39.0 | 4.99e-01 | 85.8% | 97.9% |
| 3ismC01 | 1.25.40.240 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain | 0.65 | 36.0 | 3.70e-01 | 82.7% | 55.2% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.64 | 39.0 | 4.74e-01 | 85.8% | 94.2% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.63 | 35.0 | 4.43e-01 | 87.7% | 93.5% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.63 | 36.0 | 4.40e-01 | 85.2% | 88.2% |
| 1wrdA00 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 35.0 | 4.43e-01 | 85.8% | 90.8% |
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.62 | 39.0 | 4.73e-01 | 78.4% | 99.0% |
| 3evyA00 | 1.20.58.910 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 29.0 | 3.94e-01 | 82.1% | 86.7% |
| 4p9tA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.60 | 35.0 | 4.02e-01 | 90.1% | 75.8% |
| 3mvpA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 34.0 | 3.60e-01 | 90.1% | 61.1% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.55 | 26.0 | 2.95e-01 | 70.4% | 56.0% |
| 4bmoA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.55 | 43.0 | 3.56e-01 | 82.7% | 75.5% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 31.0 | 3.64e-01 | 82.7% | 80.4% |
| 1q2lA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.54 | 35.0 | 3.17e-01 | 77.2% | 46.5% |
| 5dqqA01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.53 | 34.0 | 3.81e-01 | 83.3% | 81.2% |
| 2j1dG01 | 1.20.58.2220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain | 0.53 | 30.0 | 2.31e-01 | 100.0% | 23.0% |
| 3ibvB00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.53 | 41.0 | 2.54e-01 | 80.2% | 17.7% |
| 3purA03 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 31.0 | 3.69e-01 | 84.0% | 85.5% |
| 3vkgB03 | 1.20.58.1120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 | 0.52 | 41.0 | 4.16e-01 | 92.6% | 85.3% |
| 1bgcA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 31.0 | 3.18e-01 | 86.4% | 60.8% |
| 4irnA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.51 | 31.0 | 3.53e-01 | 90.1% | 80.7% |
| 3bujA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.50 | 38.0 | 2.86e-01 | 78.4% | 53.4% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4975245 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.71 | 38.0 | 5.02e-01 | 86.4% | 95.5% |
| 3616157 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.70 | 41.0 | 5.24e-01 | 87.7% | 98.9% |
| 3669330 | 604.1.1.148 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TBCC_N | 0.70 | 36.0 | 4.89e-01 | 85.2% | 95.3% |
| 3240456 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.69 | 37.0 | 4.90e-01 | 85.8% | 97.6% |
| 3704748 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.69 | 33.0 | 4.81e-01 | 82.1% | 100.0% |
| 3240455 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 37.0 | 4.81e-01 | 84.6% | 94.4% |
| 5058842 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.68 | 38.0 | 4.96e-01 | 86.4% | 97.8% |
| 3687029 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.63 | 36.0 | 4.52e-01 | 86.4% | 92.6% |
| 3934599 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.63 | 36.0 | 4.35e-01 | 85.8% | 84.8% |
| 3533309 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.63 | 37.0 | 4.52e-01 | 87.0% | 88.6% |
| 3526861 | 603.1.1.99 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 | 0.63 | 36.0 | 4.31e-01 | 85.8% | 82.7% |
| 3501427 | 3755.3.1.295 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1 | 0.62 | 27.0 | 2.90e-01 | 71.6% | 45.5% |
| 3786136 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.61 | 35.0 | 4.09e-01 | 85.2% | 78.3% |
| 4322883 | 601.13.1.11 ↗ | alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS › FlaF | 0.61 | 32.0 | 3.94e-01 | 85.2% | 80.0% |
| 4331100 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.59 | 32.0 | 3.99e-01 | 84.6% | 86.3% |
| 4972007 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.59 | 35.0 | 3.78e-01 | 87.7% | 67.9% |
| 3592945 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.59 | 34.0 | 4.12e-01 | 85.2% | 92.6% |
| 4534540 | 3718.1.1.1 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT | 0.59 | 32.0 | 3.88e-01 | 85.8% | 80.0% |
| 3307044 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.58 | 36.0 | 4.29e-01 | 87.7% | 93.3% |
| 3744745 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 45.0 | 3.63e-01 | 82.7% | 100.0% |
| 3965610 | 3831.1.1.1 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI | 0.54 | 26.0 | 3.42e-01 | 76.5% | 83.5% |
| 3278820 | 191.1.1.48 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_46 | 0.54 | 29.0 | 3.34e-01 | 82.1% | 70.0% |
| 3241420 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 39.0 | 3.11e-01 | 75.3% | 62.7% |
| 3547352 | 626.1.1.1 ↗ | alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2 | 0.52 | 42.0 | 3.10e-01 | 85.2% | 53.3% |
| 3430172 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 40.0 | 2.72e-01 | 81.5% | 24.0% |
| 3236963 | 603.1.1.109 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF267 | 0.50 | 39.0 | 3.07e-01 | 84.0% | 95.2% |