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MT711888.1__QNJ57345.1__Dolphis_38__00038

Bact-Vir

MT711888.1__QNJ57345.1__Dolphis_38__00038

Identity

Accession:
MT711888 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_Dolphis

TaxID: 2762288

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-73
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.76 64.0 5.49e-01 92.5% 61.7%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.75 64.0 4.14e-01 100.0% 81.8%
5lb3B02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 65.0 4.24e-01 100.0% 89.9%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 61.0 5.09e-01 98.1% 57.1%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.72 61.0 4.92e-01 100.0% 51.8%
5xfaA04 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.70 54.0 4.64e-01 84.9% 51.8%
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.66 51.0 4.74e-01 86.8% 68.6%
3bemB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.66 57.0 3.77e-01 96.2% 54.1%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.65 54.0 4.90e-01 96.2% 68.9%
1g2nA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.65 56.0 3.62e-01 98.1% 78.0%
1u5eA01 6.10.250.220 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 50.0 5.07e-01 100.0% 92.5%
1dd3A01 1.20.5.710 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin 0.63 47.0 4.64e-01 84.9% 77.2%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.62 51.0 4.19e-01 98.1% 47.3%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.62 42.0 4.07e-01 77.4% 61.9%
1ifwA00 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.54 38.0 3.16e-01 79.2% 42.4%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.26e-01 73.6% 64.6%
1dp3A00 1.10.10.450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TraM protein, DNA-binding 0.51 36.0 3.60e-01 84.9% 72.7%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4076265 3390.1.1.0 ↗ extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT 0.80 66.0 6.80e-01 92.5% 100.0%
3968144 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.77 68.0 6.40e-01 100.0% 83.1%
4553862 4146.1.1.0 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.76 59.0 6.33e-01 83.0% 95.6%
3982740 5086.1.1.190 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP 0.74 65.0 4.39e-01 100.0% 26.5%
4086475 3755.3.1.466 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CC_BshC 0.74 63.0 4.60e-01 100.0% 34.8%
2429105 4992.1.1.0 ↗ extended segments › RelB-like › RelB-like › RelB-like 0.73 62.0 5.66e-01 100.0% 73.0%
4186632 4146.1.1.3 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › PKHD_C 0.73 55.0 5.85e-01 90.6% 100.0%
3501709 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.70 60.0 5.42e-01 100.0% 73.3%
4525341 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.69 61.0 5.58e-01 100.0% 77.1%
3971349 5086.1.1.84 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.69 61.0 5.84e-01 98.1% 86.7%
3386973 5086.1.1.84 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.69 61.0 5.14e-01 100.0% 58.9%
3163958 507.1.1.2 ↗ alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaG_DnaB_bind 0.68 53.0 3.87e-01 84.9% 31.4%
4258322 5086.1.1.189 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_CzcB 0.67 58.0 5.31e-01 98.1% 77.1%
3675439 5059.1.1.52 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › PAP2 0.64 57.0 4.25e-01 98.1% 86.9%