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MT711975.1__QMP84106.1__HQ601_00036__00036

Bact-Vir

MT711975.1__QMP84106.1__HQ601_00036__00036

Identity

Accession:
MT711975 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-84
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.68 57.0 4.43e-01 96.8% 84.8%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.67 55.0 4.32e-01 96.8% 85.0%
2fipA00 3.30.70.3560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phi-29-like late genes activator, P4 0.65 38.0 3.09e-01 79.0% 31.3%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.64 51.0 4.41e-01 91.9% 68.2%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.64 50.0 3.88e-01 85.5% 48.2%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.63 53.0 3.95e-01 93.5% 40.9%
1rtqA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.62 53.0 3.50e-01 100.0% 32.0%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.62 54.0 4.14e-01 98.4% 70.4%
2n3gA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 48.0 4.65e-01 88.7% 98.6%
2felA00 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.61 52.0 3.35e-01 98.4% 54.6%
1ckeA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 46.0 3.25e-01 87.1% 29.2%
3qktD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 52.0 3.33e-01 100.0% 30.2%
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.59 49.0 3.83e-01 95.2% 56.7%
3mszB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 50.0 4.52e-01 98.4% 87.4%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.58 43.0 3.85e-01 87.1% 53.7%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 45.0 3.84e-01 85.5% 55.8%
1q9jB02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.58 49.0 3.49e-01 93.5% 70.4%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 47.0 3.59e-01 91.9% 44.7%
3akcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 47.0 3.35e-01 93.5% 32.2%
2y27A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.57 45.0 3.87e-01 88.7% 66.0%
3fvyA03 3.30.70.2600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 43.0 4.13e-01 83.9% 81.3%
4ix8A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 49.0 3.84e-01 100.0% 68.5%
3rq1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 49.0 3.68e-01 96.8% 47.7%
3vaxA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 41.0 3.59e-01 77.4% 96.8%
4cbgD02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 41.0 3.00e-01 75.8% 68.9%
3nkuA00 1.10.357.170 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.57 43.0 3.24e-01 87.1% 35.8%
1svvB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 49.0 4.35e-01 100.0% 94.6%
8ckpA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 46.0 3.06e-01 96.8% 65.2%
4nhxA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.55 40.0 2.82e-01 80.6% 44.1%
4zxwB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.55 46.0 3.47e-01 98.4% 77.9%
3fhlA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 47.0 3.44e-01 100.0% 62.5%
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 43.0 2.82e-01 91.9% 30.2%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 3.57e-01 100.0% 66.2%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.53 41.0 3.16e-01 93.5% 96.7%
3p2mA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 42.0 2.87e-01 95.2% 95.0%
2jovA01 3.10.530.10 Alpha Beta › Roll › CPE0013-like fold › CPE0013-like 0.53 35.0 3.36e-01 93.5% 59.2%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 33.0 3.76e-01 85.5% 100.0%
3va7A05 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 44.0 3.77e-01 93.5% 58.0%
6gpkA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.52 44.0 3.71e-01 96.8% 68.8%
4iefA00 2.60.40.3800 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 2.83e-01 82.3% 83.3%
2ab5A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 45.0 3.48e-01 96.8% 57.5%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.51 42.0 2.68e-01 98.4% 84.0%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.51 36.0 3.48e-01 91.9% 62.3%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.63e-01 87.1% 73.5%
2xzmG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.51 43.0 3.01e-01 91.9% 46.9%
4rckA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.51 37.0 2.65e-01 79.0% 46.1%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 37.0 2.73e-01 83.9% 50.0%
4ciuA04 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 41.0 3.66e-01 91.9% 67.7%
2h21B01 3.90.1410.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 0.50 41.0 2.77e-01 93.5% 85.1%
5wzoA00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.50 40.0 3.41e-01 98.4% 84.6%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5022749 327.1.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Alpha-lytic protease prodomain › Alpha-lytic protease prodomain 0.63 46.0 4.56e-01 90.3% 73.8%
4567535 1203.1.2.0 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 0.63 43.0 2.81e-01 96.8% 15.8%
3934668 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.62 43.0 2.72e-01 72.6% 21.5%
4177935 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.62 44.0 3.58e-01 98.4% 40.0%
5001157 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.62 49.0 4.44e-01 85.5% 74.1%
5003086 2007.1.3.70 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › 2-thiour_desulf 0.62 38.0 2.83e-01 75.8% 22.9%
4220363 327.11.1.2 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KhpA-B_KH 0.61 49.0 4.53e-01 88.7% 68.8%
3793931 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.61 49.0 3.63e-01 91.9% 66.3%
5047552 2008.1.1.201 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_CfrBI 0.61 51.0 3.38e-01 100.0% 43.3%
3606688 593.1.1.0 alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.61 46.0 3.28e-01 82.3% 67.9%
None 0.60 47.0 3.26e-01 87.1% 27.7%
3186255 223.1.1.21 a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.60 50.0 3.15e-01 91.9% 26.6%
4057632 3012.1.1.10 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › ISN1 0.60 47.0 4.27e-01 85.5% 91.8%
3723914 327.11.2.40 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF31052 0.60 41.0 4.11e-01 88.7% 70.8%
3438117 7512.1.1.1 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.59 49.0 2.91e-01 93.5% 94.4%
4182095 2004.1.1.80 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.59 47.0 3.27e-01 93.5% 29.4%
1170594 885.1.1.1 a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N 0.58 43.0 3.85e-01 87.1% 53.7%
3969151 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.58 47.0 4.33e-01 95.2% 68.8%
4518792 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.58 44.0 3.67e-01 90.3% 46.4%
4027519 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.58 32.0 3.89e-01 71.0% 94.3%
3604712 1189.1.1.1 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › Trypan_glycop 0.58 48.0 2.99e-01 95.2% 76.1%
3585826 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 37.0 4.17e-01 82.3% 100.0%
3356481 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.57 45.0 4.14e-01 95.2% 66.3%
3969345 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.57 48.0 3.39e-01 100.0% 76.8%
3339325 3887.2.1.1 a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.57 43.0 3.64e-01 83.9% 83.6%
4254813 2004.1.1.80 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.57 46.0 3.22e-01 93.5% 29.1%
4978506 3714.1.1.0 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.57 39.0 2.81e-01 72.6% 35.3%
3965667 109.4.1.520 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HemY_N 0.55 41.0 2.46e-01 77.4% 15.1%
5072410 306.6.1.6 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › GH3_C 0.55 46.0 4.15e-01 95.2% 65.6%
3838973 885.1.1.1 a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N 0.55 45.0 3.60e-01 93.5% 65.4%
3665763 2002.1.1.65 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DAHP_synth_2 0.55 41.0 2.88e-01 80.6% 46.9%
5046019 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.55 44.0 4.21e-01 96.8% 100.0%
4951908 2007.1.14.32 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › 2-thiour_desulf 0.54 41.0 2.91e-01 95.2% 23.4%
3752375 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.54 47.0 3.39e-01 100.0% 83.6%
4556488 2485.1.1.69 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DUF4174 0.54 42.0 3.42e-01 91.9% 67.4%
4976626 3714.1.1.0 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.54 40.0 2.65e-01 77.4% 32.9%
5021111 2007.1.5.19 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › 2-thiour_desulf 0.54 42.0 2.87e-01 96.8% 22.4%
3231858 304.8.1.72 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › SCVP 0.54 44.0 3.83e-01 93.5% 64.0%
3951812 7579.1.1.44 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.54 42.0 2.88e-01 95.2% 95.2%
4211411 386.1.1.231 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF2709 0.54 37.0 3.35e-01 74.2% 72.0%
3289410 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.53 44.0 2.89e-01 100.0% 63.4%
3596282 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 41.0 3.66e-01 88.7% 60.0%
3250677 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.52 44.0 3.20e-01 100.0% 49.5%
3607693 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 40.0 2.65e-01 87.1% 25.9%
4874974 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.52 42.0 2.86e-01 98.4% 91.2%
4987009 3837.1.1.1 alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 0.52 37.0 2.87e-01 75.8% 61.3%
3518548 2004.1.1.80 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.52 36.0 2.73e-01 79.0% 27.2%
4026024 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 34.0 3.75e-01 91.9% 93.3%
3254253 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.52 39.0 2.96e-01 82.3% 67.1%
3611697 1189.1.1.1 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › Trypan_glycop 0.51 42.0 2.67e-01 96.8% 62.4%
4999908 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.51 42.0 4.20e-01 93.5% 100.0%
4593130 601.7.1.40 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C 0.50 41.0 2.61e-01 90.3% 17.0%
773 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.50 41.0 2.78e-01 91.9% 82.6%
3592362 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.50 40.0 2.62e-01 91.9% 33.7%
5042930 3563.1.1.1 alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC 0.50 40.0 2.72e-01 90.3% 40.3%
4304389 5086.1.1.119 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › RRG1_C 0.50 41.0 2.91e-01 96.8% 61.8%