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MT713136.1__QMV29123.1__AP1_0420__00405

Bact-Vir

MT713136.1__QMV29123.1__AP1_0420__00405

Identity

Accession:
MT713136 ↗
Kingdom:
phage

Quality

77.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-37
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wkbA02 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.69 52.0 3.27e-01 100.0% 14.5%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 54.0 3.66e-01 100.0% 23.9%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.69 54.0 5.07e-01 100.0% 84.0%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.68 53.0 4.50e-01 100.0% 53.5%
4ga6A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.67 59.0 4.49e-01 100.0% 59.0%
2yvlA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.67 56.0 4.91e-01 100.0% 86.2%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.65 54.0 3.83e-01 100.0% 41.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.65 51.0 3.45e-01 100.0% 45.5%
3gmgA00 3.30.70.1880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 0.65 52.0 3.62e-01 100.0% 73.4%
3kwuA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.63 52.0 3.59e-01 100.0% 95.6%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 51.0 3.81e-01 100.0% 35.8%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 50.0 3.53e-01 100.0% 29.4%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.62 49.0 3.11e-01 100.0% 96.2%
2uwqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 51.0 3.97e-01 100.0% 44.2%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 51.0 3.87e-01 100.0% 40.0%
3hx1B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.61 51.0 3.73e-01 100.0% 95.3%
4w8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 47.0 3.24e-01 100.0% 48.7%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 49.0 3.53e-01 100.0% 94.8%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 46.0 3.31e-01 100.0% 28.1%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 46.0 3.32e-01 100.0% 29.9%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 43.0 2.61e-01 86.1% 93.0%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 3.82e-01 100.0% 47.1%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.59 50.0 3.11e-01 100.0% 20.1%
6ljcC01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.59 43.0 3.27e-01 88.9% 93.5%
2e9wA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 3.69e-01 100.0% 41.7%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 46.0 3.34e-01 100.0% 30.8%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.58 41.0 2.88e-01 88.9% 24.8%
4amwA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 47.0 3.22e-01 100.0% 40.5%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 49.0 3.68e-01 100.0% 65.6%
2cryA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 3.54e-01 100.0% 52.0%
2pq0A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.57 40.0 3.09e-01 83.3% 88.0%
1xhsA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.56 47.0 3.38e-01 100.0% 64.6%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 48.0 3.42e-01 100.0% 41.6%
3r4cA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.56 39.0 3.08e-01 83.3% 88.1%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 43.0 3.45e-01 100.0% 55.8%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.56 45.0 3.38e-01 100.0% 51.4%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.56 42.0 3.39e-01 100.0% 47.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 42.0 3.43e-01 100.0% 53.3%
4p4tA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 45.0 2.66e-01 100.0% 13.4%
2zbvC02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.54 37.0 2.90e-01 77.8% 52.0%
4jndA02 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 43.0 2.66e-01 100.0% 37.1%
4jxuA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.54 47.0 3.19e-01 100.0% 91.5%
2dmhA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 46.0 3.09e-01 100.0% 34.3%
2w91A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.14e-01 100.0% 40.8%
2g9gA00 2.60.120.1020 Mainly Beta › Sandwich › Jelly Rolls › PAW domain 0.53 45.0 2.84e-01 100.0% 23.3%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 44.0 2.94e-01 100.0% 55.4%
3fysA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 45.0 2.94e-01 100.0% 36.6%
3jr7A02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.52 41.0 4.10e-01 100.0% 89.5%
2pk0A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 37.0 2.45e-01 100.0% 22.3%
2b5vA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.51 43.0 2.69e-01 100.0% 55.4%
2rftA02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.51 37.0 2.42e-01 100.0% 35.1%
4jcwA02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.50 40.0 3.16e-01 100.0% 42.2%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 39.0 2.70e-01 88.9% 100.0%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.50 35.0 2.62e-01 100.0% 27.0%
1v70A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 38.0 2.96e-01 100.0% 46.7%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4340143 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.73 59.0 4.95e-01 100.0% 52.2%
3508638 284.1.1.5 a+b two layers › FKBP-like › FKBP-like › FKBP-like › Gcd10p 0.69 59.0 3.37e-01 100.0% 36.4%
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.68 55.0 5.10e-01 100.0% 80.0%
3925828 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 57.0 4.27e-01 100.0% 60.0%
339198 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.67 56.0 4.94e-01 100.0% 87.7%
3405249 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.67 49.0 4.56e-01 100.0% 60.4%
5065502 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 55.0 3.87e-01 100.0% 54.4%
4985683 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 54.0 3.98e-01 100.0% 66.7%
4467934 1.1.2.16 beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.65 55.0 3.93e-01 100.0% 94.8%
4378053 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.65 54.0 3.80e-01 100.0% 56.8%
4985680 1.1.2.16 beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.65 54.0 3.89e-01 100.0% 61.7%
3274422 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 57.0 4.24e-01 100.0% 50.0%
4972012 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 53.0 3.76e-01 100.0% 58.4%
3407580 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.63 47.0 3.97e-01 100.0% 44.3%
5001457 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.62 50.0 3.60e-01 100.0% 58.4%
3502869 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.62 52.0 4.05e-01 100.0% 77.6%
5038375 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.61 50.0 3.21e-01 100.0% 31.5%
5031225 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 44.0 3.33e-01 91.7% 33.3%
4986543 1.1.2.16 beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.61 50.0 3.73e-01 100.0% 99.0%
5070184 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 49.0 3.64e-01 100.0% 61.8%
5048876 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.61 48.0 4.24e-01 100.0% 61.5%
3512692 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 51.0 3.98e-01 100.0% 78.8%
2042105 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.61 43.0 2.80e-01 80.6% 88.2%
3916476 221.1.1.73 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA 0.61 53.0 4.04e-01 100.0% 58.8%
3473808 2498.1.1.14 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.61 44.0 2.58e-01 83.3% 46.1%
5006520 1.1.2.16 beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.60 49.0 3.73e-01 100.0% 97.0%
3637401 4081.1.1.8 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 0.60 47.0 3.02e-01 100.0% 30.0%
3941732 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.60 46.0 4.36e-01 100.0% 80.0%
5034988 1.1.2.16 beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.60 48.0 3.58e-01 100.0% 96.4%
4124563 11.1.1.335 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N 0.60 50.0 3.77e-01 100.0% 41.1%
3876105 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 44.0 3.48e-01 91.7% 93.7%
3205036 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.59 46.0 2.90e-01 100.0% 26.9%
3577630 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.59 47.0 3.45e-01 100.0% 38.5%
4360303 223.1.1.84 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF 0.59 41.0 2.40e-01 80.6% 35.8%
4940035 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 43.0 3.21e-01 86.1% 79.1%
3715519 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 43.0 2.80e-01 88.9% 18.5%
3533173 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.59 45.0 3.77e-01 100.0% 45.0%
3569981 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 3.69e-01 100.0% 46.3%
4994897 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 41.0 2.90e-01 80.6% 77.0%
3198047 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 46.0 3.50e-01 100.0% 62.9%
3875549 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.57 44.0 2.91e-01 100.0% 32.8%
3603250 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.57 40.0 3.02e-01 88.9% 26.7%
2982157 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.57 39.0 2.67e-01 88.9% 32.8%
None 0.56 46.0 2.56e-01 100.0% 7.6%
4950476 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 3.22e-01 100.0% 49.2%
4008567 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 37.0 2.56e-01 83.3% 60.0%
3711374 221.1.1.51 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 0.53 41.0 3.14e-01 100.0% 57.5%
2496895 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 43.0 3.30e-01 100.0% 48.5%
3775907 4081.1.1.8 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 0.52 40.0 2.60e-01 100.0% 67.1%
5083734 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.12e-01 100.0% 41.9%
4033853 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.52 36.0 2.76e-01 77.8% 32.0%
3573728 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.51 44.0 3.08e-01 100.0% 30.0%
3907235 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.51 37.0 2.44e-01 97.2% 17.3%
3258276 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.51 36.0 2.40e-01 97.2% 17.3%
4871764 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.50 44.0 2.98e-01 100.0% 57.7%
3267853 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.50 36.0 2.42e-01 97.2% 17.7%