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MT713136.1__QMV29156.1__AP1_0455__00438

Bact-Vir

MT713136.1__QMV29156.1__AP1_0455__00438

Identity

Accession:
MT713136 ↗
Kingdom:
phage

Quality

44.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ceceduovirus› Aeromonas_phage_AP1

TaxID: 2759193

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-131
PDB
Domain cluster: rep: rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00320__D697-821
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.56 36.0 3.06e-01 70.5% 37.4%
5iryA05 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.56 36.0 3.67e-01 70.5% 67.1%
4u9rA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 34.0 3.81e-01 72.7% 89.2%
3jsyA02 3.90.105.20 Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Ribosomal protein L10, N-terminal fragment, domain II 0.53 30.0 3.17e-01 71.6% 58.7%
6e4nA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 34.0 3.71e-01 71.6% 81.7%
2wbrA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 34.0 3.45e-01 76.1% 65.2%
2e5jA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 35.0 3.52e-01 72.7% 68.2%
1ufwA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 37.0 3.63e-01 73.9% 69.5%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.52 38.0 3.37e-01 79.5% 79.1%
5cyxA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 30.0 3.14e-01 75.0% 59.8%
5w4tA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 33.0 3.19e-01 75.0% 56.6%
8begA03 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.09e-01 73.9% 46.3%
4zi9A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 36.0 3.59e-01 76.1% 70.1%
6vg1A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 35.0 3.47e-01 73.9% 66.7%
8dqoB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 37.0 2.97e-01 78.4% 79.3%
4zi8B01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 35.0 3.36e-01 72.7% 62.6%
2la4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 33.0 3.25e-01 71.6% 58.4%
2loeA00 2.60.40.2860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 3.19e-01 73.9% 84.3%
2d9oA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 36.0 3.47e-01 75.0% 69.0%
1ejfA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 35.0 3.29e-01 72.7% 79.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080852 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.59 41.0 4.16e-01 72.7% 78.8%
4121833 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.57 35.0 3.55e-01 73.9% 62.4%
3997847 304.151.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase 0.56 39.0 3.78e-01 72.7% 66.0%
4681335 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.55 39.0 3.63e-01 76.1% 84.3%
3583062 304.9.1.62 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1+RRM_3 0.55 40.0 2.91e-01 76.1% 29.2%
3711743 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.54 37.0 3.59e-01 76.1% 63.0%
3953180 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.53 35.0 3.58e-01 70.5% 70.6%
4001836 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 37.0 3.69e-01 72.7% 74.2%
5061517 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.53 34.0 3.68e-01 71.6% 81.4%
3892714 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 35.0 3.53e-01 73.9% 67.8%
3908071 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.52 35.0 3.36e-01 73.9% 60.0%
3919735 11.1.1.918 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_FAT4_N 0.51 36.0 3.44e-01 73.9% 63.8%
3235989 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 34.0 2.55e-01 72.7% 25.7%
3570932 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.51 32.0 3.14e-01 73.9% 55.0%
5069478 11.1.1.75 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › He_PIG 0.51 30.0 3.07e-01 71.6% 56.7%
3913244 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.50 35.0 3.27e-01 73.9% 57.3%