←Back to structures

MT723942.1__QNJ58485.1__SEA_ARCHIS_80__00080

Bact-Vir

MT723942.1__QNJ58485.1__SEA_ARCHIS_80__00080

Identity

Accession:
MT723942 ↗
Kingdom:
phage

Quality

81.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jujuvirus› Gordonia_phage_Archis

TaxID: 2762396

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-24_77-113
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wnzA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.70 60.0 4.58e-01 100.0% 55.6%
1kutA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.62 51.0 4.07e-01 100.0% 82.7%
3k5iA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.62 51.0 3.65e-01 100.0% 40.4%
7zhhA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 53.0 5.13e-01 100.0% 98.5%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 48.0 3.63e-01 87.7% 83.3%
2l55A00 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.59 49.0 4.47e-01 100.0% 82.9%
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.58 49.0 4.44e-01 100.0% 78.6%
4pz7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 47.0 3.79e-01 100.0% 57.7%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 48.0 4.39e-01 100.0% 82.9%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 48.0 4.37e-01 98.2% 81.0%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 44.0 2.90e-01 94.7% 95.5%
1l1oF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 46.0 3.66e-01 100.0% 66.4%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 46.0 3.55e-01 100.0% 49.3%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.54 43.0 3.70e-01 100.0% 90.1%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 3.43e-01 96.5% 94.6%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 40.0 3.13e-01 86.0% 81.1%
6tnyB02 2.40.50.430 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 45.0 3.73e-01 100.0% 63.4%
3k0xA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 3.85e-01 100.0% 60.6%
4b0eD00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.53 35.0 3.02e-01 100.0% 40.0%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 43.0 2.80e-01 98.2% 92.6%
3vb0A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 42.0 3.03e-01 89.5% 50.0%
3b4nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.85e-01 100.0% 62.5%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 39.0 3.34e-01 87.7% 96.2%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.51 40.0 2.84e-01 86.0% 40.2%
3go5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 41.0 3.91e-01 98.2% 85.7%
3lh4A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 42.0 3.41e-01 96.5% 77.4%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3926148 2.3.1.0 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like 0.65 55.0 4.41e-01 100.0% 61.6%
3577447 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.63 38.0 3.21e-01 100.0% 34.3%
3315222 243.1.1.89 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF7074 0.60 47.0 3.92e-01 86.0% 98.0%
4096999 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.60 52.0 5.03e-01 100.0% 95.4%
180091 2.1.1.55 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CusF_Ec 0.59 49.0 4.47e-01 100.0% 82.9%
3442524 375.1.1.303 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ABCA11_C 0.59 37.0 3.79e-01 96.5% 65.5%
4360971 2.1.1.293 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27162 0.59 50.0 4.87e-01 100.0% 96.9%
3660451 243.3.1.45 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › TIN1 0.58 45.0 3.69e-01 87.7% 83.0%
4946191 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 49.0 4.52e-01 100.0% 92.3%
4263787 2.1.1.293 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27162 0.58 48.0 4.71e-01 100.0% 96.9%
5036328 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 49.0 4.38e-01 100.0% 92.9%
4990168 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 49.0 4.74e-01 100.0% 92.3%
3729086 5.1.3.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › TrAA12 0.57 41.0 2.47e-01 89.5% 10.6%
4544763 4212.1.1.1 ↗ beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N 0.56 38.0 2.99e-01 100.0% 31.5%
3610271 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 46.0 4.42e-01 100.0% 92.8%
3415761 7056.1.1.3 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.56 43.0 4.57e-01 91.2% 94.0%
3702659 2.1.1.92 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_D_N 0.56 46.0 3.66e-01 100.0% 55.6%
3479863 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 4.10e-01 100.0% 63.5%
3621335 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 4.05e-01 100.0% 74.1%
3227946 2.1.1.126 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 0.54 44.0 4.29e-01 100.0% 90.8%
3487108 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.93e-01 100.0% 62.4%
5021930 4312.1.1.22 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › PF27370 0.53 35.0 3.06e-01 70.2% 86.0%
3959126 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.53 39.0 2.72e-01 100.0% 25.0%
3238435 2.1.1.126 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 0.53 44.0 4.11e-01 100.0% 82.7%
4014123 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 41.0 2.59e-01 86.0% 27.3%
4046344 2.1.1.73 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.51 40.0 3.89e-01 100.0% 92.9%
3211902 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.50 42.0 3.20e-01 100.0% 52.7%
D2 high residues 32-68
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ngyA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.58 43.0 3.26e-01 83.8% 39.4%
3hiaA00 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.56 39.0 3.38e-01 78.4% 62.1%
2g7cB01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.54 39.0 3.45e-01 83.8% 89.4%
4pyrA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 40.0 2.75e-01 97.3% 40.4%
2j8gA02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.53 39.0 3.21e-01 86.5% 72.0%
2g7cA02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.53 37.0 3.03e-01 86.5% 76.9%
4lxqB00 3.40.50.12230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 36.0 2.28e-01 83.8% 24.1%
2ep5A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 39.0 2.72e-01 100.0% 97.7%
2pvpA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 35.0 2.73e-01 89.2% 43.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3630470 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.66 47.0 4.83e-01 75.7% 85.7%
3572917 356.1.1.0 ↗ few secondary structure elements › PMP inhibitors › PMP inhibitors › PMP inhibitors 0.58 40.0 4.21e-01 75.7% 96.7%
3781211 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 37.0 2.81e-01 70.3% 79.0%
4889337 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.55 42.0 2.59e-01 100.0% 37.7%
3513367 372.2.1.1 ↗ a+b complex topology › RNase A-like › EndoU-like › EndoU-like › XendoU 0.54 40.0 2.52e-01 100.0% 20.4%
4965389 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.54 37.0 3.57e-01 91.9% 72.7%