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MT732457.1__QQV90442.1__Harreka1_35__00035
Bact-VirMT732457.1__QQV90442.1__Harreka1_35__00035
Identity
- Accession:
- MT732457 ↗
- Kingdom:
- phage
Quality
75.1
mean pLDDT
Taxonomy
TaxID: 2745673
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-73
Domain cluster:
rep: ON453898.1__WAK79281.1__X__00081__D137-191
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v0uA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.65 | 50.0 | 4.03e-01 | 84.9% | 53.4% |
| 2dc0A00 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.62 | 54.0 | 3.35e-01 | 98.6% | 99.8% |
| 4eg9A00 | 2.50.20.40 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.62 | 43.0 | 3.05e-01 | 72.6% | 35.9% |
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.60 | 43.0 | 2.87e-01 | 76.7% | 68.6% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.59 | 35.0 | 3.83e-01 | 78.1% | 73.2% |
| 5w8mA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.58 | 41.0 | 3.05e-01 | 74.0% | 94.9% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 45.0 | 4.51e-01 | 83.6% | 94.7% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.58 | 48.0 | 4.24e-01 | 100.0% | 62.4% |
| 4bgjA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.58 | 49.0 | 4.21e-01 | 95.9% | 72.9% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.56 | 48.0 | 4.39e-01 | 100.0% | 71.4% |
| 3klqA01 | 2.60.40.3050 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 44.0 | 3.71e-01 | 83.6% | 66.4% |
| 3cqnB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 40.0 | 3.21e-01 | 78.1% | 66.5% |
| 3h51A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 37.0 | 3.08e-01 | 71.2% | 93.0% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 42.0 | 3.62e-01 | 82.2% | 64.0% |
| 4mn5A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 36.0 | 3.22e-01 | 74.0% | 48.5% |
| 1zhxA03 | 2.40.160.120 | Mainly Beta › Beta Barrel › Porin › | 0.53 | 39.0 | 2.95e-01 | 79.5% | 49.2% |
| 2ebkA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.53 | 44.0 | 3.81e-01 | 100.0% | 76.6% |
| 4pz6A02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.53 | 42.0 | 3.03e-01 | 90.4% | 97.9% |
| 2kigA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.52 | 43.0 | 3.39e-01 | 94.5% | 45.3% |
| 5ek8A01 | 2.60.40.3330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 44.0 | 3.74e-01 | 97.3% | 88.1% |
| 1ue6D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 39.0 | 3.57e-01 | 86.3% | 79.8% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 34.0 | 3.13e-01 | 86.3% | 51.6% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3382011 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.80 | 62.0 | 6.02e-01 | 82.2% | 76.2% |
| 3925547 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.72 | 50.0 | 3.69e-01 | 74.0% | 29.7% |
| 3629508 | 5.1.4.262 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1 | 0.72 | 49.0 | 3.05e-01 | 71.2% | 26.8% |
| 3712198 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.71 | 52.0 | 3.22e-01 | 78.1% | 49.5% |
| 3661619 | 192.18.1.0 ↗ | alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like | 0.71 | 49.0 | 3.52e-01 | 74.0% | 27.1% |
| 3945393 | 7089.1.1.2 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 | 0.69 | 51.0 | 5.01e-01 | 95.9% | 72.5% |
| 3903171 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.67 | 46.0 | 3.02e-01 | 71.2% | 26.1% |
| 3269700 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.66 | 45.0 | 2.99e-01 | 71.2% | 28.5% |
| 3786707 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.66 | 53.0 | 3.35e-01 | 90.4% | 62.7% |
| 4452393 | 304.112.1.10 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › Med13_N | 0.65 | 45.0 | 4.01e-01 | 72.6% | 64.8% |
| 3606812 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.65 | 48.0 | 2.98e-01 | 80.8% | 33.4% |
| 3727689 | 2008.1.1.143 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 | 0.64 | 55.0 | 3.90e-01 | 100.0% | 73.9% |
| 3607858 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.63 | 57.0 | 5.03e-01 | 100.0% | 75.2% |
| 3586673 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 50.0 | 3.26e-01 | 90.4% | 39.5% |
| 3896807 | 5.1.4.235 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st | 0.63 | 50.0 | 3.14e-01 | 87.7% | 93.8% |
| 3905749 | 5.1.5.105 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st | 0.63 | 50.0 | 3.13e-01 | 87.7% | 95.0% |
| 3622828 | 5.1.4.319 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st | 0.63 | 50.0 | 3.25e-01 | 90.4% | 40.5% |
| 3586825 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 50.0 | 3.21e-01 | 89.0% | 46.9% |
| 5027780 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.61 | 44.0 | 4.75e-01 | 95.9% | 96.7% |
| 3269184 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 53.0 | 4.86e-01 | 95.9% | 74.7% |
| 3475221 | 5.1.5.173 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_VPS8, Beta-prop_WDR3_2nd | 0.61 | 44.0 | 2.89e-01 | 78.1% | 46.1% |
| 3850746 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.60 | 44.0 | 2.78e-01 | 80.8% | 20.9% |
| 4998018 | 2003.1.1.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA | 0.60 | 45.0 | 2.90e-01 | 79.5% | 42.4% |
| 3497398 | 395.1.1.0 ↗ | few secondary structure elements › Midkine-related › Midkine-related › Midkine-related | 0.60 | 36.0 | 4.10e-01 | 74.0% | 86.0% |
| 3612671 | 5.1.11.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 | 0.60 | 47.0 | 2.96e-01 | 87.7% | 67.3% |
| 3882304 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 49.0 | 4.29e-01 | 100.0% | 60.9% |
| 3761570 | 330.1.1.22 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 | 0.59 | 48.0 | 4.20e-01 | 100.0% | 58.3% |
| 3581555 | 633.33.1.1 ↗ | alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz | 0.59 | 43.0 | 2.90e-01 | 78.1% | 47.3% |
| 4025866 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 41.0 | 2.70e-01 | 76.7% | 56.2% |
| 3274239 | 330.1.1.18 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_DHX29 | 0.57 | 49.0 | 4.31e-01 | 100.0% | 66.1% |
| 4682079 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.57 | 41.0 | 3.96e-01 | 78.1% | 89.4% |
| 4959715 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 46.0 | 2.96e-01 | 91.8% | 51.9% |
| 3266302 | 543.1.1.0 ↗ | few secondary structure elements › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related | 0.57 | 40.0 | 3.16e-01 | 75.3% | 91.9% |
| 4281749 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.56 | 46.0 | 3.99e-01 | 100.0% | 56.7% |
| 3381427 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.56 | 41.0 | 2.66e-01 | 78.1% | 96.1% |
| 3964735 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.55 | 44.0 | 2.87e-01 | 93.2% | 64.0% |
| 3459205 | 5.1.4.156 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 | 0.55 | 47.0 | 2.79e-01 | 100.0% | 43.8% |
| 3327993 | 5.1.4.156 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 | 0.55 | 43.0 | 2.90e-01 | 87.7% | 82.9% |
| 3451695 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 47.0 | 4.47e-01 | 100.0% | 92.2% |
| 3819893 | 5.1.4.288 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N | 0.54 | 41.0 | 2.64e-01 | 86.3% | 29.1% |
| 3717203 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 37.0 | 2.78e-01 | 71.2% | 65.1% |
| 3174953 | 69.1.1.2 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint | 0.54 | 41.0 | 3.00e-01 | 95.9% | 27.1% |
| 3489862 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.54 | 47.0 | 2.71e-01 | 100.0% | 46.1% |
| 3899230 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.54 | 39.0 | 3.59e-01 | 95.9% | 57.0% |
| 3604100 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 44.0 | 3.21e-01 | 87.7% | 62.4% |
| 5055184 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.53 | 45.0 | 4.33e-01 | 100.0% | 83.5% |
| 3818469 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.53 | 39.0 | 3.38e-01 | 82.2% | 71.2% |
| 2163476 | 1053.1.1.1 ↗ | beta barrels › Factor H-binding protein (fHbp) N-terminal beta-barrel domain › Factor H-binding protein (fHbp) N-terminal beta-barrel domain › Factor H-binding protein (fHbp) N-terminal beta-barrel domain › FHBP_N | 0.52 | 43.0 | 3.54e-01 | 94.5% | 65.3% |
| 3574661 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 29.0 | 3.48e-01 | 72.6% | 86.7% |
| 3839607 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.51 | 41.0 | 3.52e-01 | 87.7% | 78.0% |
| 3995685 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.51 | 41.0 | 3.62e-01 | 87.7% | 83.5% |
| 3475901 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 36.0 | 3.48e-01 | 94.5% | 63.3% |
| 3215667 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.51 | 41.0 | 3.47e-01 | 87.7% | 78.3% |
| 3516513 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.51 | 40.0 | 2.31e-01 | 87.7% | 31.3% |
| 5064859 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.51 | 37.0 | 2.62e-01 | 78.1% | 91.7% |