←Back to structures
MT732457.1__QQV90465.1__Harreka1_58__00058
Bact-VirMT732457.1__QQV90465.1__Harreka1_58__00058
Identity
- Accession:
- MT732457 ↗
- Kingdom:
- phage
Quality
91.3
mean pLDDT
Taxonomy
TaxID: 2745673
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 81-164
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.74 | 31.0 | 3.18e-01 | 100.0% | 38.6% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.61 | 35.0 | 3.99e-01 | 77.4% | 77.0% |
| 3hl1A02 | 6.10.140.1530 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 33.0 | 3.68e-01 | 77.4% | 80.0% |
| 4gdxA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.54 | 40.0 | 3.69e-01 | 79.8% | 72.1% |
| 1fioA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 37.0 | 2.90e-01 | 75.0% | 38.4% |
| 3evyA00 | 1.20.58.910 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 31.0 | 3.18e-01 | 72.6% | 60.2% |
| 5cbgA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 36.0 | 3.44e-01 | 75.0% | 99.0% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.51 | 30.0 | 2.46e-01 | 70.2% | 30.4% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.50 | 31.0 | 3.00e-01 | 77.4% | 53.2% |
| 3bg2A03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.50 | 36.0 | 3.51e-01 | 77.4% | 77.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3388844 | 3755.3.1.427 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ACP53EA | 0.59 | 41.0 | 4.00e-01 | 72.6% | 74.7% |
| 3220017 | 174.1.1.13 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF2700 | 0.57 | 41.0 | 3.48e-01 | 81.0% | 44.1% |
| 4612826 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.54 | 33.0 | 3.44e-01 | 78.6% | 63.7% |
| 3290433 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.54 | 33.0 | 3.32e-01 | 76.2% | 57.8% |
| 3285011 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.52 | 36.0 | 2.55e-01 | 72.6% | 62.0% |
| 3734736 | 3684.1.1.22 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › Opi1 | 0.51 | 35.0 | 2.96e-01 | 86.9% | 39.4% |
| 3952682 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.50 | 36.0 | 2.73e-01 | 78.6% | 87.5% |
D2
medium
residues 3-40
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vsoF01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.72 | 61.0 | 3.78e-01 | 97.4% | 16.0% |
| 7ztbB01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.67 | 55.0 | 3.56e-01 | 100.0% | 21.5% |
| 3ajfA00 | 1.20.1440.190 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tenuivirus movement protein | 0.66 | 49.0 | 3.93e-01 | 100.0% | 38.0% |
| 1zc6A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.66 | 56.0 | 3.77e-01 | 100.0% | 57.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4000037 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.75 | 59.0 | 5.37e-01 | 100.0% | 65.0% |
| 3924754 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.69 | 54.0 | 3.17e-01 | 100.0% | 18.2% |
| 4653567 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.69 | 61.0 | 4.16e-01 | 100.0% | 29.2% |
| 4009607 | 101.1.2.583 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27264 | 0.68 | 49.0 | 3.73e-01 | 84.2% | 31.0% |
| 4965149 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.68 | 53.0 | 5.07e-01 | 100.0% | 82.0% |
| 4025749 | 6087.1.1.0 ↗ | extended segments › N-terminal region of NMB0537 › N-terminal region of NMB0537 › N-terminal region of NMB0537 | 0.67 | 49.0 | 4.98e-01 | 94.7% | 94.3% |
| 4954038 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.63 | 53.0 | 3.15e-01 | 100.0% | 48.1% |
| 3242209 | 576.1.1.1 ↗ | few secondary structure elements › Tetraspanin extracellular domain › Tetraspanin extracellular domain › Tetraspanin extracellular domain › Tetraspanin | 0.61 | 51.0 | 3.43e-01 | 100.0% | 25.0% |
| 3320298 | 4955.1.1.8 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › AtuA_ferredoxin | 0.51 | 41.0 | 2.93e-01 | 94.7% | 60.5% |