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MT732473.1__QQV91372.1__Leef1_1__00001

Bact-Vir

MT732473.1__QQV91372.1__Leef1_1__00001

Identity

Accession:
MT732473 ↗
Kingdom:
phage

Quality

94.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Helgolandviridae› Leefvirus› Polaribacter_phage_Leef_1

TaxID: 2745684

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-68
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 60.0 5.83e-01 98.4% 91.7%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 59.0 5.65e-01 98.4% 91.8%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 44.0 4.78e-01 87.5% 92.0%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 4.95e-01 98.4% 71.3%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.63 49.0 4.31e-01 87.5% 60.6%
1ofcX04 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 48.0 4.31e-01 90.6% 64.9%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.60 48.0 4.47e-01 90.6% 70.7%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 46.0 4.51e-01 95.3% 81.9%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.58 41.0 3.79e-01 89.1% 56.2%
3mvcB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 45.0 3.56e-01 95.3% 63.6%
1abvA00 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.56 43.0 3.76e-01 87.5% 56.2%
1dpgA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 45.0 3.41e-01 95.3% 53.7%
6s10A01 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.55 44.0 3.94e-01 95.3% 84.3%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.53 42.0 3.57e-01 92.2% 70.6%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 44.0 3.73e-01 98.4% 55.5%
1vw4801 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.53 40.0 3.85e-01 81.2% 80.8%
1dxrL02 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.52 37.0 3.19e-01 79.7% 45.4%
3n9xA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 35.0 2.68e-01 70.3% 85.1%
1iq0A03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.51 41.0 3.57e-01 98.4% 77.6%
8f4cA01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.50 38.0 3.15e-01 84.4% 53.8%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.50 39.0 2.64e-01 92.2% 29.5%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4933407 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 58.0 6.18e-01 95.3% 98.2%
4142344 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 57.0 6.04e-01 92.2% 100.0%
3597985 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 61.0 5.64e-01 100.0% 76.2%
3988417 101.1.2.619 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.71 61.0 5.95e-01 96.9% 87.1%
5048617 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 60.0 5.61e-01 98.4% 100.0%
3954610 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 61.0 5.85e-01 98.4% 85.3%
5018899 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 57.0 5.83e-01 95.3% 93.7%
4660104 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 5.68e-01 92.2% 95.4%
3976495 101.1.1.187 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.68 60.0 5.97e-01 96.9% 96.9%
5073473 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 5.32e-01 92.2% 93.8%
5030693 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 61.0 5.14e-01 100.0% 61.0%
4380839 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 58.0 5.55e-01 95.3% 82.7%
4129575 101.1.1.187 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.68 58.0 5.83e-01 95.3% 95.4%
4580980 101.1.1.51 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Slx4 0.67 56.0 5.23e-01 95.3% 75.0%
5017707 101.1.1.548 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.67 54.0 5.39e-01 89.1% 86.2%
3885941 101.1.1.132 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SENP3_5_N 0.66 54.0 5.27e-01 90.6% 87.1%
4214506 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.66 51.0 5.37e-01 92.2% 96.4%
5045098 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.66 58.0 5.14e-01 96.9% 70.0%
4961900 101.1.1.187 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.66 57.0 5.41e-01 98.4% 85.3%
4605066 101.1.1.51 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Slx4 0.65 54.0 4.93e-01 95.3% 96.6%
3827266 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 55.0 4.27e-01 96.9% 51.7%
5070355 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 55.0 5.32e-01 92.2% 88.6%
3741636 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 55.0 4.88e-01 98.4% 67.7%
4378615 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.63 48.0 5.03e-01 96.9% 100.0%
3282419 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.62 52.0 4.37e-01 95.3% 76.5%
3201940 101.33.1.0 ↗ alpha arrays › HTH › Replication foci-targeting sequence C-terminal domain › Replication foci-targeting sequence C-terminal domain 0.62 52.0 4.56e-01 95.3% 76.0%
3693167 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 4.65e-01 95.3% 92.9%
3730243 101.33.1.0 ↗ alpha arrays › HTH › Replication foci-targeting sequence C-terminal domain › Replication foci-targeting sequence C-terminal domain 0.60 49.0 4.44e-01 95.3% 84.2%
4679421 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.58 48.0 3.60e-01 95.3% 76.5%
4531271 101.1.2.498 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25870 0.58 47.0 3.69e-01 95.3% 52.0%
4278019 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.57 46.0 3.60e-01 96.9% 41.9%
3910 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.56 43.0 3.76e-01 87.5% 56.2%
4665445 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.56 46.0 3.40e-01 93.8% 73.7%
3239343 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 41.0 3.59e-01 90.6% 55.5%
3554793 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.53 43.0 4.18e-01 95.3% 86.7%
3886097 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 36.0 3.49e-01 89.1% 61.3%
4841990 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.53 41.0 3.54e-01 87.5% 75.7%
4310744 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.52 42.0 3.29e-01 95.3% 82.5%