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MT732473.1__QQV91408.1__Leef1_42__00042

Bact-Vir

MT732473.1__QQV91408.1__Leef1_42__00042

Identity

Accession:
MT732473 ↗
Kingdom:
phage

Quality

79.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Helgolandviridae› Leefvirus› Polaribacter_phage_Leef_1

TaxID: 2745684

Cluster

View cluster (166 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-52_70-152_272-296
PDB
Domain cluster: rep: OP172730.1__WAX09976.1__BT709P1_00008__00008__D5-52_72-148_272-300
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j5uA01 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.67 34.0 3.91e-01 91.8% 65.0%
1ohgA01 3.30.2400.10 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 0.61 48.0 5.03e-01 82.9% 100.0%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.59 16.0 2.80e-01 85.4% 71.1%
6i9gA01 3.30.2400.30 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.55 49.0 4.83e-01 98.1% 95.3%
3dktA01 3.30.2400.30 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.55 48.0 4.78e-01 97.5% 94.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 17.0 2.56e-01 88.6% 69.4%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4241362 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.68 63.0 5.05e-01 98.7% 95.6%
3952452 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.68 60.0 4.84e-01 94.9% 91.8%
5041371 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.67 57.0 4.50e-01 89.9% 95.5%
3946670 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.66 60.0 4.94e-01 96.8% 92.7%
5080806 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.65 52.0 4.25e-01 83.5% 96.1%
3942344 2485.3.1.19 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 0.65 52.0 4.15e-01 84.2% 86.8%
3965498 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.64 52.0 4.06e-01 84.2% 89.2%
2989372 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.64 52.0 4.09e-01 84.2% 85.2%
3583655 2485.3.1.5 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.64 51.0 4.00e-01 84.2% 88.4%
2989289 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.63 51.0 3.98e-01 84.2% 84.5%
2899245 2485.3.1.10 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 0.63 51.0 3.89e-01 84.2% 88.2%
2989356 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.63 50.0 4.08e-01 84.2% 89.5%
2989506 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.63 50.0 4.05e-01 84.2% 89.2%
2995627 2485.3.1.7 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.63 50.0 4.01e-01 83.5% 87.7%
2989340 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.62 49.0 3.91e-01 84.2% 84.1%
2995325 2485.3.1.9 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.62 49.0 3.73e-01 84.2% 86.4%
5081487 2485.3.1.10 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 0.61 48.0 3.99e-01 82.3% 95.6%
3587769 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.61 55.0 4.50e-01 98.1% 94.8%
4991535 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.61 56.0 4.80e-01 99.4% 95.9%
2989363 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.61 48.0 3.88e-01 84.2% 88.6%
4890673 2485.3.1.9 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.60 48.0 3.70e-01 84.2% 85.4%
4031028 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.60 55.0 4.54e-01 99.4% 92.1%
5083079 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.60 54.0 4.28e-01 98.1% 92.9%
3949155 2485.3.1.11 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.60 48.0 4.01e-01 84.2% 87.9%
2842229 2485.3.1.9 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.59 47.0 3.56e-01 84.2% 87.9%
4611583 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.58 38.0 4.31e-01 74.7% 86.7%
5083777 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.58 52.0 4.21e-01 98.1% 95.0%
4955362 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.57 50.0 4.38e-01 93.7% 95.7%
4799073 309.1.1.4 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.56 24.0 3.02e-01 94.9% 62.2%
2639625 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.55 44.0 3.66e-01 84.2% 86.1%
2724409 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.54 48.0 4.10e-01 98.1% 92.8%
3608810 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 26.0 3.30e-01 74.7% 77.8%
5055225 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.54 29.0 3.78e-01 72.8% 100.0%
3164700 2485.3.1.15 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Mu-like_gpT 0.53 49.0 4.02e-01 99.4% 69.6%
3026399 3555.1.1.1 ↗ a+b three layers › Major capsid protein GP7 › Major capsid protein GP7 › Major capsid protein GP7 › GP7 0.52 43.0 3.31e-01 88.0% 59.4%
1877546 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.51 43.0 3.46e-01 88.6% 89.7%
D2 high residues 155-265_299-324
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e0zC03 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.71 49.0 5.66e-01 82.5% 100.0%
1ohgA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.67 50.0 5.62e-01 77.4% 99.0%
1yueA03 3.30.2320.40 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › 0.66 49.0 5.20e-01 77.4% 97.5%
1lxmA04 2.60.40.1380 Mainly Beta › Sandwich › Immunoglobulin-like › E set domains; domain 4 0.57 28.0 3.62e-01 75.9% 82.9%
1h7mA00 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.54 35.0 4.05e-01 85.4% 93.8%
3byqA00 3.30.1330.110 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 0.53 38.0 3.44e-01 75.2% 86.9%
4u7mA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 32.0 3.76e-01 76.6% 88.3%
2bx2L02 3.40.1260.20 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › Ribonuclease E, catalytic domain 0.52 38.0 4.24e-01 82.5% 96.4%
5i7wB01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 40.0 3.60e-01 86.1% 80.6%
3l2pA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.51 28.0 3.58e-01 85.4% 100.0%
6vsxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 42.0 4.00e-01 89.8% 95.6%
4c7oA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 39.0 3.53e-01 82.5% 90.2%
3o4oC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.89e-01 86.9% 92.5%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4954548 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.80 67.0 5.21e-01 87.6% 65.8%
2989356 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.65 54.0 4.20e-01 89.1% 62.2%
4638799 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.65 41.0 4.30e-01 74.5% 69.6%
4932208 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.60 42.0 3.76e-01 78.1% 50.8%
3480520 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.58 43.0 4.39e-01 78.8% 80.0%
4027388 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.57 42.0 4.26e-01 78.1% 86.4%
4988088 2004.1.1.99 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N 0.54 42.0 3.54e-01 82.5% 66.4%
3604485 2004.1.1.505 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_30 0.53 44.0 3.33e-01 91.2% 88.5%
5014194 2004.1.1.161 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TmcA_N 0.52 42.0 3.57e-01 89.8% 84.6%
3917194 2004.1.1.185 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11,AAA_12 0.51 43.0 2.86e-01 90.5% 47.8%
3581421 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 42.0 2.76e-01 90.5% 73.3%
3183411 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.51 39.0 3.28e-01 82.5% 76.9%
4094424 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.51 38.0 3.07e-01 80.3% 81.0%
3705794 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 40.0 3.56e-01 87.6% 56.5%
3969270 2004.1.1.176 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp 0.50 40.0 3.59e-01 84.7% 85.8%