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MT732474.1__QQV91427.1__Gundel1_105__00104
Bact-VirMT732474.1__QQV91427.1__Gundel1_105__00104
Identity
- Accession:
- MT732474 ↗
- Kingdom:
- phage
Quality
84.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pachyviridae›
Gundelvirus›
Tenacibaculum_phage_Gundel_1
TaxID: 2745672
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-48
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xmxA03 | 1.10.10.680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) | 0.65 | 45.0 | 3.63e-01 | 76.2% | 43.8% |
| 2wb6A00 | 3.90.1150.90 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.62 | 44.0 | 3.37e-01 | 100.0% | 28.9% |
| 2vlaA03 | 1.10.10.2090 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 41.0 | 3.10e-01 | 73.8% | 70.8% |
| 4ev0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 41.0 | 3.56e-01 | 76.2% | 58.4% |
| 2fmyA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 47.0 | 3.98e-01 | 100.0% | 63.4% |
| 3go5A04 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 40.0 | 3.65e-01 | 73.8% | 76.2% |
| 3d0sA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 47.0 | 3.98e-01 | 100.0% | 63.7% |
| 1r7jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 3.20e-01 | 76.2% | 48.9% |
| 2wb7A02 | 2.60.40.2050 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 45.0 | 3.22e-01 | 100.0% | 59.4% |
| 2kx2A00 | 3.30.780.30 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › | 0.57 | 45.0 | 3.66e-01 | 100.0% | 49.0% |
| 2gauA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 45.0 | 3.85e-01 | 100.0% | 61.7% |
| 1epfA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 41.0 | 3.29e-01 | 81.0% | 48.4% |
| 3lstA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 38.0 | 3.21e-01 | 73.8% | 48.8% |
| 7cluA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 3.18e-01 | 73.8% | 47.2% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 2.80e-01 | 73.8% | 36.4% |
| 3cdhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 37.0 | 2.78e-01 | 73.8% | 32.8% |
| 8oh9B05 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 37.0 | 3.38e-01 | 71.4% | 55.0% |
| 6dftJ00 | 3.40.910.10 | Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase | 0.54 | 41.0 | 2.58e-01 | 100.0% | 21.2% |
| 1bluA00 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 37.0 | 3.17e-01 | 73.8% | 40.0% |
| 4p63D00 | 3.40.910.10 | Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase | 0.54 | 42.0 | 2.64e-01 | 100.0% | 21.8% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 44.0 | 3.49e-01 | 100.0% | 52.5% |
| 2k5tA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 43.0 | 3.20e-01 | 100.0% | 53.1% |
| 3e97A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 42.0 | 3.64e-01 | 100.0% | 59.0% |
| 5cvrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 42.0 | 3.54e-01 | 100.0% | 57.1% |
| 7snsB01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 39.0 | 2.89e-01 | 100.0% | 32.1% |
| 3e7wA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.52 | 43.0 | 2.55e-01 | 100.0% | 12.8% |
| 1af7A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 41.0 | 2.75e-01 | 100.0% | 90.7% |
| 2w8mA00 | 3.40.1350.50 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › D212 PD-(D/E)XK nuclease, catalytic motif | 0.50 | 39.0 | 2.80e-01 | 100.0% | 41.8% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3927747 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 45.0 | 3.37e-01 | 81.0% | 50.4% |
| 4945699 | 3310.1.1.0 ↗ | a+b two layers › Insertion domain in 60S ribosomal protein rpP0 (L10P) › Insertion domain in 60S ribosomal protein rpP0 (L10P) › Insertion domain in 60S ribosomal protein rpP0 (L10P) | 0.61 | 43.0 | 3.58e-01 | 76.2% | 43.8% |
| 5015794 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 41.0 | 3.42e-01 | 71.4% | 60.0% |
| 4553364 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 41.0 | 3.54e-01 | 73.8% | 48.6% |
| 3469267 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 50.0 | 3.92e-01 | 100.0% | 48.4% |
| 3938615 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 43.0 | 3.59e-01 | 81.0% | 48.8% |
| 4933212 | 2003.1.4.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › DS | 0.58 | 47.0 | 2.91e-01 | 100.0% | 22.7% |
| 3993350 | 630.1.1.1 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind | 0.58 | 44.0 | 3.15e-01 | 85.7% | 32.1% |
| 3281254 | 101.1.2.741 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7059 | 0.57 | 40.0 | 3.26e-01 | 76.2% | 44.7% |
| 3839061 | 205.1.1.40 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, Fer4_9 | 0.55 | 38.0 | 3.21e-01 | 73.8% | 40.0% |
| 3515307 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.55 | 41.0 | 3.21e-01 | 83.3% | 49.5% |
| 5045601 | 2003.1.4.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › DS | 0.55 | 42.0 | 2.67e-01 | 100.0% | 22.6% |
| 3931332 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.55 | 38.0 | 3.01e-01 | 76.2% | 48.0% |
| 136060 | 205.1.1.35 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4+Fer4_7 | 0.54 | 37.0 | 3.12e-01 | 73.8% | 39.5% |
| 3597210 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.54 | 47.0 | 2.83e-01 | 100.0% | 18.3% |
| 1487480 | 4011.1.1.0 ↗ | beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins | 0.53 | 47.0 | 3.82e-01 | 100.0% | 70.9% |
| 5052363 | 4011.1.1.0 ↗ | beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins | 0.53 | 46.0 | 3.68e-01 | 100.0% | 75.3% |
| 5083694 | 304.57.1.0 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like | 0.52 | 36.0 | 2.98e-01 | 81.0% | 41.0% |
| 5076483 | 4011.1.1.1 ↗ | beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › AMP-binding | 0.52 | 45.0 | 3.69e-01 | 100.0% | 65.0% |
| 5038078 | 304.20.1.4 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C | 0.51 | 38.0 | 2.94e-01 | 95.2% | 41.5% |
| 4028897 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 39.0 | 3.15e-01 | 83.3% | 82.5% |