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MT732474.1__QQV91441.1__Gundel1_118__00117

Bact-Vir

MT732474.1__QQV91441.1__Gundel1_118__00117

Identity

Accession:
MT732474 ↗
Kingdom:
phage

Quality

92.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-59
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kzsA02 6.10.140.1870 Special › Helix non-globular › Helix Hairpins › 0.81 56.0 5.28e-01 76.3% 61.4%
2e52B01 3.40.91.70 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Type II restriction endonuclease, HindIII 0.78 71.0 4.69e-01 100.0% 72.3%
4exjA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.77 55.0 4.28e-01 74.6% 38.0%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.77 66.0 5.46e-01 94.9% 84.5%
1k8kG00 1.25.40.190 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 0.76 65.0 4.80e-01 91.5% 39.6%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.75 49.0 5.26e-01 72.9% 78.4%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.75 54.0 4.20e-01 76.3% 40.8%
4gycA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.74 53.0 3.57e-01 76.3% 21.8%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.74 58.0 4.66e-01 84.7% 66.4%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.72 62.0 4.51e-01 93.2% 58.6%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.72 51.0 4.12e-01 76.3% 39.5%
4b7yD00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.70 50.0 4.27e-01 76.3% 63.9%
3djaA01 1.20.920.70 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.70 52.0 3.88e-01 79.7% 42.1%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.70 63.0 5.06e-01 100.0% 74.8%
4iluA02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.70 57.0 4.66e-01 94.9% 48.6%
5c9eB01 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.69 56.0 4.94e-01 89.8% 72.4%
1kpsB00 1.25.40.200 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ran-GTPase activating protein 1, C-terminal domain 0.69 57.0 4.24e-01 100.0% 35.9%
1pprM01 1.40.10.10 Mainly Alpha › Alpha solenoid › Peridinin-chlorophyll Protein, Chain M › Peridinin-chlorophyll A binding 0.67 47.0 3.47e-01 74.6% 93.5%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.67 52.0 4.57e-01 88.1% 80.6%
7d3uC01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 48.0 3.98e-01 76.3% 43.0%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.65 45.0 4.36e-01 78.0% 65.2%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.65 54.0 4.83e-01 94.9% 83.9%
1fafA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.65 52.0 4.80e-01 91.5% 81.0%
4fbcA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.65 48.0 3.50e-01 84.7% 27.6%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.64 45.0 4.37e-01 74.6% 73.5%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.64 54.0 4.35e-01 94.9% 87.2%
3l0oA01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.64 38.0 4.17e-01 91.5% 73.5%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.63 50.0 4.32e-01 91.5% 96.1%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.63 49.0 4.90e-01 86.4% 100.0%
2gf4A00 1.20.1270.110 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 0.62 43.0 3.77e-01 72.9% 52.3%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 44.0 4.13e-01 76.3% 62.2%
4rw0A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.62 51.0 3.62e-01 93.2% 31.5%
1xjuA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.61 48.0 3.57e-01 86.4% 96.2%
2q7sA00 3.40.630.40 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases 0.61 47.0 3.01e-01 81.4% 97.4%
8ai9B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 50.0 4.27e-01 96.6% 67.3%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 42.0 4.19e-01 74.6% 74.2%
3kr9A02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 43.0 4.33e-01 81.4% 100.0%
2au3A04 1.20.50.30 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › 0.60 42.0 4.34e-01 78.0% 81.8%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 50.0 4.12e-01 94.9% 84.8%
1e5rB02 1.10.1720.10 Mainly Alpha › Orthogonal Bundle › Proline Oxidase; Chain: A, Domain 2 › L-proline 3-hydroxylase, C-terminal domain 0.59 51.0 4.56e-01 98.3% 69.0%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 49.0 4.06e-01 100.0% 52.1%
4ikhA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 46.0 3.74e-01 93.2% 65.4%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 49.0 4.15e-01 100.0% 87.7%
3t0yA01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.58 37.0 3.54e-01 72.9% 57.6%
3ibhA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 50.0 4.06e-01 100.0% 75.4%
4wr4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 44.0 3.82e-01 91.5% 69.5%
4ri6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 47.0 3.91e-01 100.0% 70.6%
3cbuA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 45.0 3.64e-01 96.6% 45.5%
3u37A02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.56 45.0 3.10e-01 96.6% 23.0%
2fulB00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 45.0 3.41e-01 94.9% 38.4%
1pn9B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 46.0 3.67e-01 100.0% 91.5%
1axdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 43.0 3.50e-01 94.9% 44.7%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 41.0 3.42e-01 89.8% 47.8%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.52 36.0 3.64e-01 74.6% 82.0%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.52 33.0 3.69e-01 74.6% 84.4%
5cqgA03 1.10.10.2210 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 41.0 3.82e-01 94.9% 84.8%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
59149 109.1.1.0 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.85 61.0 4.63e-01 74.6% 39.2%
3673226 622.2.1.0 alpha bundles › YvfG-like › YvfG-like › YvfG-like 0.85 72.0 7.50e-01 96.6% 98.2%
4524004 604.11.1.1 alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S 0.83 74.0 6.77e-01 96.6% 80.0%
3681622 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.82 58.0 5.34e-01 74.6% 61.3%
3698292 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.82 59.0 4.34e-01 76.3% 36.6%
3178255 4146.1.1.17 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › GATA_AreA 0.77 62.0 5.54e-01 89.8% 63.7%
3976077 5059.1.1.20 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › DUF1422 0.77 58.0 4.56e-01 79.7% 45.2%
3228841 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.76 55.0 4.68e-01 76.3% 47.4%
4961961 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.75 53.0 4.89e-01 74.6% 60.0%
4953859 3930.1.1.3 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.73 62.0 4.76e-01 93.2% 43.8%
3927475 192.19.1.0 alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like 0.73 52.0 5.36e-01 74.6% 85.5%
5081088 101.1.2.932 alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc 0.72 49.0 4.40e-01 71.2% 91.6%
3269103 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.72 60.0 4.43e-01 89.8% 53.8%
3582885 192.4.1.12 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › FmiP_Thoc5 0.72 60.0 4.78e-01 91.5% 63.5%
3709346 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 61.0 3.84e-01 96.6% 53.7%
3731535 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.71 52.0 4.35e-01 78.0% 48.0%
3962012 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.71 57.0 4.87e-01 88.1% 78.9%
3718035 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 50.0 4.90e-01 74.6% 73.8%
4014485 5044.1.1.0 extended segments › PsbZ-like › PsbZ-like › PsbZ-like 0.70 52.0 4.44e-01 79.7% 49.5%
3216820 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.70 58.0 3.68e-01 93.2% 99.3%
4890706 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.68 48.0 2.87e-01 76.3% 10.1%
3725703 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.68 60.0 3.59e-01 100.0% 59.3%
4021235 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.67 38.0 3.84e-01 89.8% 56.7%
4507346 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.65 54.0 4.09e-01 94.9% 38.0%
3413674 3755.3.1.123 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tektin 0.65 45.0 3.12e-01 76.3% 21.3%
3615252 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 53.0 3.34e-01 96.6% 46.6%
3593123 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.64 45.0 3.94e-01 76.3% 48.4%
3996794 109.25.1.0 alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A 0.64 52.0 4.54e-01 94.9% 68.4%
4025651 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.63 52.0 4.51e-01 93.2% 63.2%
3651435 192.29.1.222 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › GATA_AreA 0.63 51.0 4.74e-01 91.5% 72.0%
4953000 2011.2.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like 0.62 43.0 3.33e-01 72.9% 35.2%
4057275 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.61 51.0 4.25e-01 96.6% 54.5%
3438527 219.1.1.23 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.61 50.0 3.34e-01 93.2% 30.8%
3961547 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.60 42.0 3.56e-01 72.9% 73.0%
4029114 2006.1.3.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim 0.60 49.0 3.59e-01 94.9% 57.8%
4938271 605.6.1.0 alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.60 49.0 4.22e-01 88.1% 58.9%
3468013 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.59 46.0 3.82e-01 83.1% 93.0%
4997485 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.58 50.0 3.71e-01 100.0% 45.6%
3185069 375.10.1.1 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol 0.58 39.0 3.08e-01 74.6% 32.8%
3405078 3226.1.1.2 alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp 0.58 47.0 2.88e-01 96.6% 77.2%
3818822 4120.1.1.0 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.58 44.0 3.27e-01 84.7% 35.0%
3482803 6092.1.1.0 alpha bundles › Helical extension domain in Regulator of G-protein signaling 9 › Helical extension domain in Regulator of G-protein signaling 9 › Helical extension domain in Regulator of G-protein signaling 9 0.57 44.0 3.69e-01 89.8% 65.2%
3173158 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 40.0 4.39e-01 76.3% 88.0%
3229078 150.5.1.124 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › Claudin_3 0.57 40.0 3.56e-01 78.0% 93.7%
136829 109.1.1.6 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 0.55 46.0 3.70e-01 100.0% 95.3%
3943133 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.53 32.0 3.65e-01 72.9% 82.2%
3456436 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 41.0 2.90e-01 91.5% 25.7%