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MT732474.1__QQV91458.1__Gundel1_27__00027
Bact-VirMT732474.1__QQV91458.1__Gundel1_27__00027
Identity
- Accession:
- MT732474 ↗
- Kingdom:
- phage
Quality
92.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pachyviridae›
Gundelvirus›
Tenacibaculum_phage_Gundel_1
TaxID: 2745672
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-197
Domain cluster:
rep: NC_009231.1__YP_001110790.1__phiC2p75__00072__D2-195
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04245.19 best | NA37 | 79.6 | 3.90e-22 | 94.4% | 58.0% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g59B00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.59 | 41.0 | 4.47e-01 | 96.9% | 83.4% |
| 1wnhA01 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 30.0 | 4.13e-01 | 73.5% | 98.0% |
| 3jvgA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.57 | 41.0 | 4.31e-01 | 97.4% | 82.7% |
| 1hyrC01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.55 | 40.0 | 4.20e-01 | 98.0% | 81.7% |
| 1a6zA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.55 | 41.0 | 4.28e-01 | 98.5% | 84.4% |
| 1zt4C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.54 | 40.0 | 4.15e-01 | 97.4% | 81.6% |
| 3vwoA02 | 2.10.70.40 | Mainly Beta › Ribbon › Complement Module; domain 1 › peptidoglycan hydrolase | 0.54 | 17.0 | 3.10e-01 | 74.5% | 98.0% |
| 3gp6A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 31.0 | 3.41e-01 | 82.7% | 74.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3842370 | 233.1.1.0 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain | 0.57 | 41.0 | 4.38e-01 | 97.4% | 82.3% |
| 3521727 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.56 | 42.0 | 4.38e-01 | 98.0% | 82.7% |
| 3657432 | 220.1.1.205 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PHS1 | 0.53 | 29.0 | 3.52e-01 | 94.4% | 79.8% |
| 5027751 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.51 | 30.0 | 3.34e-01 | 91.3% | 73.3% |
D2
medium
residues 201-293
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.73 | 55.0 | 5.86e-01 | 78.5% | 100.0% |
| 4u2vA02 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.70 | 34.0 | 3.67e-01 | 88.2% | 52.5% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.61 | 34.0 | 3.21e-01 | 90.3% | 45.0% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.59 | 43.0 | 4.43e-01 | 79.6% | 81.1% |
| 3ss3C02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.59 | 47.0 | 3.36e-01 | 90.3% | 74.9% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 31.0 | 3.45e-01 | 93.5% | 63.5% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 46.0 | 4.34e-01 | 84.9% | 82.1% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.58 | 46.0 | 4.34e-01 | 88.2% | 99.1% |
| 2o0yB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 39.0 | 4.46e-01 | 74.2% | 100.0% |
| 2bv6A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 42.0 | 3.69e-01 | 77.4% | 65.4% |
| 2wteA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 4.37e-01 | 87.1% | 94.4% |
| 1bbyA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 4.43e-01 | 78.5% | 98.6% |
| 3to7A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 4.33e-01 | 78.5% | 87.7% |
| 1p4xA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 43.0 | 3.90e-01 | 83.9% | 59.8% |
| 4kibA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 42.0 | 4.16e-01 | 93.5% | 74.7% |
| 3bddD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 3.71e-01 | 78.5% | 60.6% |
| 4xrfA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 3.57e-01 | 77.4% | 59.9% |
| 4g9yA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 41.0 | 3.61e-01 | 78.5% | 64.0% |
| 8agaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 3.67e-01 | 77.4% | 68.3% |
| 4wcgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 35.0 | 4.18e-01 | 74.2% | 100.0% |
| 3gwzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 39.0 | 4.02e-01 | 86.0% | 78.7% |
| 7l1iA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 3.43e-01 | 77.4% | 55.6% |
| 7cluA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 4.21e-01 | 89.2% | 85.4% |
| 4rs8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 4.14e-01 | 77.4% | 86.9% |
| 7z0sE02 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.54 | 44.0 | 3.10e-01 | 90.3% | 53.3% |
| 6p73A02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 40.0 | 3.57e-01 | 80.6% | 67.8% |
| 3uo2B02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.54 | 37.0 | 3.87e-01 | 100.0% | 78.6% |
| 3mgkB00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.54 | 43.0 | 3.40e-01 | 88.2% | 90.0% |
| 3gw2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 4.10e-01 | 91.4% | 81.7% |
| 5tjjA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 4.25e-01 | 77.4% | 97.3% |
| 1lddA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 4.36e-01 | 78.5% | 100.0% |
| 2kobA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.53 | 41.0 | 4.11e-01 | 84.9% | 97.8% |
| 2a61B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.42e-01 | 87.1% | 51.8% |
| 1p6rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 4.31e-01 | 97.8% | 95.1% |
| 1nubA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 41.0 | 3.61e-01 | 84.9% | 92.4% |
| 3r4kB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 34.0 | 3.82e-01 | 73.1% | 95.2% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 40.0 | 3.95e-01 | 87.1% | 76.0% |
| 2l01A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.97e-01 | 73.1% | 89.6% |
| 3s2wG00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.47e-01 | 78.5% | 62.4% |
| 3bj6B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.31e-01 | 78.5% | 58.9% |
| 2d1hB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.66e-01 | 87.1% | 73.5% |
| 2nyxB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 41.0 | 3.59e-01 | 89.2% | 91.5% |
| 5lnkJ01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.50 | 37.0 | 3.01e-01 | 77.4% | 43.2% |
ECOD (71)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963771 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.86 | 74.0 | 7.70e-01 | 95.7% | 98.8% |
| 4984330 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.70 | 39.0 | 3.95e-01 | 100.0% | 54.4% |
| 5035379 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.68 | 59.0 | 4.42e-01 | 94.6% | 85.8% |
| 3598016 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 45.0 | 4.82e-01 | 72.0% | 90.0% |
| 3796387 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.63 | 46.0 | 4.23e-01 | 74.2% | 60.9% |
| 3685473 | 109.4.1.295 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COP9_hel_rpt | 0.63 | 46.0 | 2.89e-01 | 75.3% | 16.2% |
| 4506987 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.63 | 47.0 | 4.01e-01 | 78.5% | 72.0% |
| 4952939 | 148.1.3.251 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30647 | 0.63 | 45.0 | 5.07e-01 | 78.5% | 100.0% |
| 4426239 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.63 | 48.0 | 4.10e-01 | 79.6% | 77.9% |
| 3735508 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 43.0 | 3.87e-01 | 71.0% | 54.4% |
| 4998335 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 43.0 | 4.72e-01 | 83.9% | 88.0% |
| 1141998 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.62 | 43.0 | 4.64e-01 | 71.0% | 93.7% |
| 4505585 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.62 | 44.0 | 4.32e-01 | 74.2% | 68.0% |
| 3940183 | 101.1.2.123 ↗ | alpha arrays › HTH › HTH › winged helix domain › Paf67 | 0.62 | 42.0 | 4.63e-01 | 74.2% | 86.7% |
| 3287135 | 6164.1.1.2 ↗ | alpha bundles › Bestrophin › Bestrophin › Bestrophin › DUF4239 | 0.62 | 55.0 | 4.06e-01 | 100.0% | 72.0% |
| 4895797 | 101.1.2.257 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI,CSN4_RPN5_eIF3a | 0.61 | 42.0 | 4.70e-01 | 71.0% | 93.1% |
| 4836986 | 101.1.2.120 ↗ | alpha arrays › HTH › HTH › winged helix domain › DDRGK | 0.60 | 42.0 | 4.67e-01 | 73.1% | 90.7% |
| 5046804 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 44.0 | 3.77e-01 | 76.3% | 72.4% |
| 4682562 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.60 | 50.0 | 4.01e-01 | 91.4% | 74.6% |
| 3557944 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.59 | 41.0 | 4.57e-01 | 72.0% | 92.0% |
| 5045361 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 40.0 | 4.15e-01 | 71.0% | 73.3% |
| 5061617 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.58 | 50.0 | 3.21e-01 | 94.6% | 27.7% |
| 5001714 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.58 | 49.0 | 3.24e-01 | 94.6% | 29.3% |
| 4991175 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 49.0 | 4.98e-01 | 93.5% | 95.6% |
| 3970023 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 39.0 | 4.18e-01 | 73.1% | 83.7% |
| 3853979 | 101.1.2.573 ↗ | alpha arrays › HTH › HTH › winged helix domain › NPHP3_hel | 0.56 | 43.0 | 3.94e-01 | 86.0% | 60.8% |
| 4031440 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.56 | 43.0 | 4.44e-01 | 88.2% | 90.6% |
| 4994270 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.56 | 41.0 | 4.44e-01 | 90.3% | 97.3% |
| 3386834 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 44.0 | 4.11e-01 | 87.1% | 80.0% |
| 4978078 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 38.0 | 3.92e-01 | 72.0% | 76.7% |
| 3981504 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.55 | 41.0 | 4.34e-01 | 78.5% | 91.3% |
| 5040284 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.55 | 41.0 | 4.17e-01 | 90.3% | 78.9% |
| 3688900 | 7579.1.1.89 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE | 0.55 | 40.0 | 2.49e-01 | 77.4% | 37.9% |
| 3202609 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 44.0 | 4.23e-01 | 90.3% | 80.9% |
| 3957931 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 41.0 | 4.29e-01 | 90.3% | 93.8% |
| 3940198 | 6126.1.1.0 ↗ | alpha bundles › Helical domain in EHD2 › Helical domain in EHD2 › Helical domain in EHD2 | 0.54 | 35.0 | 3.21e-01 | 100.0% | 48.8% |
| 4467359 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.54 | 43.0 | 3.59e-01 | 88.2% | 54.1% |
| 4977918 | 101.1.2.210 ↗ | alpha arrays › HTH › HTH › winged helix domain › CggR_N | 0.54 | 44.0 | 4.42e-01 | 90.3% | 87.4% |
| 5048345 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 40.0 | 3.96e-01 | 86.0% | 75.5% |
| 5074567 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 40.0 | 3.65e-01 | 79.6% | 60.0% |
| 3866769 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.96e-01 | 77.4% | 80.0% |
| 3279254 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 41.0 | 4.23e-01 | 93.5% | 92.9% |
| 3875706 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.53 | 42.0 | 3.64e-01 | 88.2% | 73.5% |
| 4946524 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 41.0 | 3.91e-01 | 87.1% | 70.0% |
| 3666952 | 109.3.1.11 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_5 | 0.53 | 39.0 | 3.05e-01 | 76.3% | 42.5% |
| 5065138 | 101.1.2.222 ↗ | alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N | 0.53 | 43.0 | 4.22e-01 | 90.3% | 83.0% |
| 5051882 | 101.1.2.143 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_34 | 0.53 | 41.0 | 3.88e-01 | 87.1% | 70.0% |
| 3985403 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.52 | 33.0 | 3.48e-01 | 90.3% | 71.2% |
| 4554985 | 3322.1.1.0 ↗ | alpha bundles › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta | 0.52 | 37.0 | 3.31e-01 | 73.1% | 74.6% |
| 5048188 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 3.51e-01 | 87.1% | 53.1% |
| 4992938 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.52 | 40.0 | 4.06e-01 | 81.7% | 84.4% |
| 4973736 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 4.20e-01 | 83.9% | 100.0% |
| 4217425 | 101.1.2.304 ↗ | alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase | 0.52 | 37.0 | 3.79e-01 | 74.2% | 82.2% |
| 3289857 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.52 | 38.0 | 3.99e-01 | 77.4% | 91.3% |
| 3255880 | 101.1.2.511 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI, PF26569 | 0.52 | 37.0 | 3.55e-01 | 75.3% | 69.1% |
| 3813076 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.52 | 39.0 | 4.07e-01 | 94.6% | 90.6% |
| 3971561 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 38.0 | 3.82e-01 | 78.5% | 77.9% |
| 4575461 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.52 | 40.0 | 4.12e-01 | 87.1% | 94.4% |
| 3739047 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.51 | 36.0 | 3.93e-01 | 76.3% | 90.7% |
| 3511772 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 36.0 | 3.78e-01 | 75.3% | 94.1% |
| 3685184 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.51 | 36.0 | 3.44e-01 | 73.1% | 63.5% |
| 3828246 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.51 | 40.0 | 3.89e-01 | 98.9% | 75.5% |
| 3481517 | 101.1.2.304 ↗ | alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase | 0.51 | 34.0 | 3.77e-01 | 71.0% | 86.7% |
| 4952441 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.51 | 40.0 | 2.99e-01 | 87.1% | 74.6% |
| 3286573 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 4.00e-01 | 94.6% | 96.2% |
| 3587599 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 39.0 | 4.02e-01 | 84.9% | 87.8% |
| 3822341 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.51 | 37.0 | 3.80e-01 | 90.3% | 84.7% |
| 5053251 | 101.1.2.120 ↗ | alpha arrays › HTH › HTH › winged helix domain › DDRGK | 0.50 | 36.0 | 3.54e-01 | 74.2% | 70.0% |
| 5000128 | 101.1.2.109 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rio2_N | 0.50 | 38.0 | 3.92e-01 | 87.1% | 89.4% |
| 4973693 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.50 | 44.0 | 3.68e-01 | 98.9% | 61.2% |
| 142978 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.50 | 35.0 | 3.92e-01 | 75.3% | 100.0% |
D3
medium
residues 297-336
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b5fB00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.62 | 48.0 | 4.02e-01 | 100.0% | 80.5% |
| 3wbiA04 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 41.0 | 2.81e-01 | 70.0% | 35.9% |
| 2l66A00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.57 | 41.0 | 3.85e-01 | 95.0% | 62.3% |
| 2jx8A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.56 | 36.0 | 3.53e-01 | 95.0% | 53.2% |
| 3ho6B00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.56 | 47.0 | 2.92e-01 | 100.0% | 38.1% |
| 2wdqA04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.55 | 35.0 | 3.50e-01 | 100.0% | 53.7% |
| 4g6tA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.55 | 44.0 | 3.17e-01 | 95.0% | 53.1% |
| 1goiA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.53 | 41.0 | 3.29e-01 | 92.5% | 87.8% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 36.0 | 3.31e-01 | 95.0% | 52.6% |
| 3pvlA05 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 38.0 | 3.08e-01 | 80.0% | 55.3% |
| 1pnjA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 39.0 | 3.04e-01 | 82.5% | 61.6% |
| 3hlbD00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 38.0 | 2.36e-01 | 100.0% | 90.6% |
| 2dulA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 38.0 | 2.42e-01 | 100.0% | 43.2% |
| 1y0nA00 | 1.10.10.610 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like | 0.51 | 39.0 | 3.46e-01 | 95.0% | 64.8% |
| 6aqgD02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 38.0 | 2.30e-01 | 90.0% | 54.7% |
| 6inxA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 40.0 | 3.51e-01 | 92.5% | 87.7% |
| 1xhhA00 | 2.60.40.1900 | Mainly Beta › Sandwich › Immunoglobulin-like › Beta-microseminoprotein (PSP94) domain | 0.51 | 36.0 | 2.83e-01 | 97.5% | 34.1% |
| 3alfA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.50 | 40.0 | 3.40e-01 | 92.5% | 88.6% |
| 5dahA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.50 | 39.0 | 2.81e-01 | 100.0% | 66.9% |
| 2ethA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 41.0 | 2.91e-01 | 100.0% | 42.6% |
| 3axsA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 37.0 | 2.36e-01 | 100.0% | 43.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4076504 | 7527.1.1.2 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 | 0.64 | 49.0 | 2.81e-01 | 85.0% | 76.1% |
| 3716046 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.60 | 42.0 | 2.44e-01 | 85.0% | 9.9% |
| 3821922 | 4.1.1.299 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 | 0.58 | 41.0 | 2.99e-01 | 80.0% | 46.4% |
| 4936151 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.55 | 43.0 | 2.97e-01 | 100.0% | 23.7% |
| 3323621 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.55 | 45.0 | 2.94e-01 | 100.0% | 23.8% |
| 3810782 | 5.1.5.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF295 | 0.53 | 43.0 | 2.63e-01 | 100.0% | 20.6% |
| 3904756 | 11.1.1.852 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 | 0.53 | 39.0 | 2.86e-01 | 87.5% | 62.1% |
| 3895011 | 11.1.1.852 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 | 0.52 | 39.0 | 2.81e-01 | 87.5% | 65.7% |
| 3170335 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 34.0 | 2.25e-01 | 100.0% | 12.9% |
| 5045869 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 34.0 | 2.54e-01 | 100.0% | 20.3% |
| 3569969 | 109.4.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 | 0.51 | 36.0 | 2.33e-01 | 87.5% | 14.0% |
| 4507143 | 219.1.1.111 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 | 0.50 | 34.0 | 2.12e-01 | 72.5% | 13.0% |
| 4025629 | 375.3.1.1 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-DNL | 0.50 | 37.0 | 3.12e-01 | 90.0% | 76.5% |
| 3407169 | 101.1.2.178 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_61 | 0.50 | 40.0 | 3.12e-01 | 100.0% | 78.1% |