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MT732474.1__QQV91491.1__Gundel1_57__00057

Bact-Vir

MT732474.1__QQV91491.1__Gundel1_57__00057

Identity

Accession:
MT732474 ↗
Kingdom:
phage

Quality

89.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-107
PDB
D2 medium residues 108-182
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.70 44.0 4.00e-01 100.0% 47.0%
5fhiA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 40.0 3.21e-01 81.3% 30.2%
3cl3A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.69 52.0 5.04e-01 84.0% 72.6%
2nsfA01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.69 58.0 4.61e-01 96.0% 91.2%
2qnlA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.67 58.0 4.60e-01 100.0% 95.7%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.64 50.0 4.35e-01 84.0% 56.9%
2ijeS00 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.64 45.0 3.19e-01 74.7% 84.8%
4p9fA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.62 50.0 4.01e-01 85.3% 93.8%
2mpcA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.62 48.0 4.54e-01 84.0% 90.0%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.62 48.0 3.97e-01 84.0% 49.6%
2n00A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.62 49.0 4.60e-01 89.3% 74.7%
4ielA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 39.0 3.39e-01 84.0% 42.2%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 44.0 4.39e-01 84.0% 77.9%
3rv1A01 1.20.1270.260 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 43.0 4.20e-01 80.0% 90.5%
1xqoA01 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.57 44.0 3.90e-01 86.7% 55.1%
3zbhA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.57 45.0 4.21e-01 84.0% 70.0%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.57 41.0 4.10e-01 84.0% 73.8%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.56 43.0 4.35e-01 84.0% 80.5%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 42.0 4.21e-01 82.7% 80.0%
1r6bX03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 36.0 3.47e-01 76.0% 56.8%
3cbuA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 42.0 3.44e-01 81.3% 71.6%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 49.0 4.70e-01 100.0% 95.4%
2phzA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.55 48.0 3.77e-01 96.0% 98.7%
2gl2B00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 43.0 3.76e-01 84.0% 68.8%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 47.0 3.97e-01 96.0% 57.7%
3bg2A03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.54 47.0 4.36e-01 98.7% 99.0%
1g71A02 1.10.8.160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA primase S; domain 2 0.53 42.0 3.86e-01 90.7% 70.4%
5cqgA03 1.10.10.2210 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 30.0 2.99e-01 80.0% 53.2%
2cvzA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 43.0 3.56e-01 88.0% 89.4%
2bk9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 43.0 3.57e-01 97.3% 77.8%
1f81A00 1.20.1020.10 Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain 0.52 36.0 3.49e-01 73.3% 73.6%
1nt4A02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 43.0 3.54e-01 97.3% 76.9%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3198528 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.76 54.0 6.07e-01 78.7% 100.0%
3793999 604.1.1.118 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › GOSR1_N 0.73 48.0 3.85e-01 82.7% 35.2%
3477985 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.71 55.0 5.65e-01 82.7% 100.0%
3302459 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.70 44.0 4.27e-01 82.7% 57.6%
3724166 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.69 50.0 5.27e-01 78.7% 87.7%
4282729 130.1.1.45 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PF29669 0.68 50.0 4.68e-01 84.0% 63.2%
3927575 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.67 49.0 5.35e-01 78.7% 98.3%
3372352 101.1.1.69 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_7 0.67 38.0 3.93e-01 72.0% 58.6%
4960347 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.66 45.0 4.19e-01 100.0% 55.8%
4855172 4048.1.1.1 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.66 35.0 3.82e-01 76.0% 61.7%
3876214 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.65 49.0 4.31e-01 81.3% 84.3%
3786257 310.2.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › MIX23 0.62 42.0 3.69e-01 84.0% 46.1%
4011005 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.62 47.0 4.96e-01 88.0% 98.4%
5011869 604.5.1.1 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU_div 0.62 51.0 3.62e-01 88.0% 92.6%
4995682 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.60 49.0 4.68e-01 94.7% 88.9%
3744787 633.22.1.0 alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) 0.60 54.0 4.48e-01 100.0% 84.6%
4289721 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.60 46.0 4.16e-01 81.3% 89.0%
5035080 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.59 44.0 3.52e-01 81.3% 72.9%
3520491 109.6.1.1 alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF 0.59 46.0 3.08e-01 82.7% 40.0%
3981661 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 44.0 4.17e-01 80.0% 67.8%
4994837 3651.1.1.0 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.54 41.0 3.85e-01 81.3% 82.2%
3281299 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.53 45.0 3.63e-01 90.7% 79.3%
3672491 109.4.1.528 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF 0.52 42.0 3.48e-01 86.7% 56.2%
5017062 7094.1.1.4 alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › PF27273 0.52 40.0 4.02e-01 81.3% 81.3%
184784 185.2.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › PfEMP1 core intracellular domain › PfEMP1 core intracellular domain › ATS 0.51 42.0 4.13e-01 96.0% 88.9%
3259348 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 37.0 2.73e-01 78.7% 38.6%
D3 medium residues 183-255
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xp8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.81 62.0 6.71e-01 95.9% 98.3%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.76 64.0 6.42e-01 97.3% 88.0%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.54 32.0 3.06e-01 100.0% 48.4%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.52 39.0 3.10e-01 83.6% 88.8%
1ncsA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.51 32.0 3.68e-01 72.6% 97.9%
4qdgA02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.21e-01 82.2% 83.0%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4650117 502.1.1.1 a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.76 64.0 6.26e-01 97.3% 82.5%
3992839 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 40.0 4.75e-01 84.9% 100.0%
3352811 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.64 44.0 3.83e-01 71.2% 97.3%
3789788 2005.1.1.7 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.64 53.0 3.37e-01 93.2% 24.2%
3790093 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.64 53.0 3.23e-01 93.2% 19.0%
3936594 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 43.0 4.53e-01 90.4% 80.0%
5023419 2005.1.1.7 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.63 54.0 3.19e-01 97.3% 16.0%
4634109 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.63 54.0 3.19e-01 97.3% 16.0%
4249852 2005.1.1.7 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.62 53.0 3.65e-01 97.3% 36.7%
None 0.62 53.0 3.17e-01 97.3% 15.8%
3470611 2005.1.1.7 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.62 53.0 3.50e-01 97.3% 30.3%
3403644 2005.1.1.7 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.62 54.0 3.75e-01 100.0% 37.6%
3403471 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.61 39.0 4.42e-01 87.7% 96.0%
3245636 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.60 41.0 4.56e-01 91.8% 96.4%
3409645 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.59 36.0 4.23e-01 82.2% 100.0%
4963287 375.1.1.334 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_0758 0.57 39.0 4.42e-01 84.9% 94.5%
3786022 708.1.2.10 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › HECT_2 0.57 40.0 3.40e-01 90.4% 43.5%
4335812 708.1.2.10 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › HECT_2 0.55 42.0 3.69e-01 87.7% 54.5%
3180823 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.55 28.0 3.06e-01 78.1% 55.0%
5022019 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 3.86e-01 100.0% 70.0%
3579437 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 40.0 4.12e-01 79.5% 92.9%
4965602 605.1.1.361 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF7520 0.54 34.0 3.46e-01 80.8% 62.7%
5012092 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.54 37.0 2.71e-01 72.6% 75.0%
3232349 708.1.2.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.54 42.0 3.79e-01 87.7% 61.5%
3560258 7579.1.1.81 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Arb2 0.53 39.0 2.61e-01 78.1% 46.9%
4946426 3241.1.1.0 alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 0.52 46.0 3.27e-01 97.3% 36.3%
3616640 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 44.0 3.94e-01 97.3% 75.2%
3995608 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.51 40.0 3.82e-01 90.4% 76.7%