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MT732474.1__QQV91527.1__Gundel1_9__00009
Bact-VirMT732474.1__QQV91527.1__Gundel1_9__00009
Identity
- Accession:
- MT732474 ↗
- Kingdom:
- phage
Quality
89.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pachyviridae›
Gundelvirus›
Tenacibaculum_phage_Gundel_1
TaxID: 2745672
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-63
Domain cluster:
rep: NC_028924.1__YP_009209731.1__AVT43_gp71__00071__D163-218
D2
high
residues 67-73_77-122
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1atiB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.66 | 58.0 | 4.56e-01 | 100.0% | 96.4% |
| 4hwtA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.63 | 54.0 | 4.35e-01 | 100.0% | 88.2% |
| 1httA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.62 | 51.0 | 4.32e-01 | 98.1% | 99.0% |
| 1tu7A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 43.0 | 3.60e-01 | 81.1% | 60.6% |
| 5bmnA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.54 | 37.0 | 2.99e-01 | 73.6% | 70.6% |
| 3hrdB02 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.52 | 39.0 | 2.85e-01 | 83.0% | 84.6% |
| 3iylW04 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 38.0 | 2.58e-01 | 84.9% | 92.3% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3484622 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.72 | 58.0 | 5.08e-01 | 90.6% | 63.7% |
| 3936594 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.70 | 50.0 | 4.76e-01 | 77.4% | 76.9% |
| 3692529 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.70 | 50.0 | 5.45e-01 | 75.5% | 100.0% |
| 3936595 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 47.0 | 4.61e-01 | 73.6% | 71.7% |
| 3318003 | 386.1.1.206 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-XS | 0.68 | 55.0 | 4.91e-01 | 100.0% | 62.7% |
| 3936596 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.68 | 53.0 | 4.40e-01 | 84.9% | 100.0% |
| 3223817 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.67 | 50.0 | 4.84e-01 | 81.1% | 73.3% |
| 3328443 | 5055.1.1.8 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › zf-XS | 0.67 | 55.0 | 4.78e-01 | 100.0% | 60.0% |
| 3579437 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.67 | 48.0 | 4.46e-01 | 79.2% | 64.3% |
| 3616640 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 49.0 | 3.97e-01 | 81.1% | 45.7% |
| 3393174 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.64 | 54.0 | 4.33e-01 | 100.0% | 93.9% |
| 4163716 | 386.1.1.6 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 | 0.63 | 51.0 | 5.12e-01 | 98.1% | 90.9% |
| 3260512 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.62 | 44.0 | 4.40e-01 | 77.4% | 78.2% |
| 4985994 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.53 | 44.0 | 2.71e-01 | 98.1% | 24.8% |
| 3241153 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 45.0 | 3.28e-01 | 100.0% | 51.2% |
| 4976876 | 7528.1.1.3 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_III | 0.51 | 37.0 | 2.99e-01 | 81.1% | 80.0% |
| 4995186 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.51 | 39.0 | 2.91e-01 | 86.8% | 78.1% |
| 3314730 | 375.1.1.13 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae | 0.50 | 35.0 | 3.43e-01 | 75.5% | 86.7% |