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MT732475.1__QQV91558.1__Peternella1_22__00022

Bact-Vir

MT732475.1__QQV91558.1__Peternella1_22__00022

Identity

Accession:
MT732475 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Winoviridae› Peternellavirus› Winogradskyella_phage_Peternella_1

TaxID: 2745699

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-77
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 42.0 3.99e-01 95.4% 56.4%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.62 49.0 3.91e-01 100.0% 42.9%
2hljA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 42.0 3.44e-01 81.5% 63.5%
7tm7B01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 42.0 2.62e-01 83.1% 36.0%
4c2dA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 50.0 4.43e-01 100.0% 75.3%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.55 45.0 3.92e-01 96.9% 57.0%
1u04A02 3.90.70.180 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 47.0 3.99e-01 98.5% 78.6%
3r87A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 39.0 3.27e-01 83.1% 69.7%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.43e-01 92.3% 71.0%
2o3oA01 2.40.128.690 Mainly Beta › Beta Barrel › Lipocalin › YycH protein, domain 3-like 0.51 43.0 3.66e-01 100.0% 81.8%
1zwxA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 42.0 2.81e-01 93.8% 46.9%
2c2iA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 45.0 3.45e-01 98.5% 90.6%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 36.0 2.86e-01 73.8% 35.0%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.51 43.0 3.91e-01 98.5% 68.1%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.50 36.0 3.18e-01 76.9% 88.9%
5jqkA03 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.50 39.0 2.68e-01 92.3% 60.4%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932460 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.70 38.0 3.92e-01 78.5% 54.0%
3837281 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.65 53.0 3.87e-01 100.0% 33.5%
3460576 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.64 46.0 3.16e-01 80.0% 20.4%
5054112 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 51.0 5.17e-01 100.0% 87.7%
3826141 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 54.0 4.88e-01 98.5% 70.0%
3635435 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.62 53.0 4.07e-01 100.0% 42.1%
3264336 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.62 41.0 3.75e-01 72.3% 50.0%
3460645 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.60 43.0 2.71e-01 98.5% 13.4%
2556671 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.60 43.0 4.41e-01 76.9% 82.0%
3828823 3324.1.1.2 ↗ extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases 0.60 53.0 3.49e-01 98.5% 34.0%
3175156 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 48.0 4.74e-01 100.0% 82.9%
3339497 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.59 51.0 4.12e-01 100.0% 53.1%
5008413 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 43.0 3.66e-01 80.0% 59.1%
3817655 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.57 50.0 4.07e-01 100.0% 54.4%
3237781 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 36.0 3.67e-01 98.5% 64.6%
5068798 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.57 43.0 3.85e-01 83.1% 61.1%
4634682 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.57 38.0 3.08e-01 70.8% 38.5%
3611765 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 3.70e-01 90.8% 91.5%
5031658 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 35.0 3.72e-01 100.0% 78.0%
4012966 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 41.0 3.36e-01 100.0% 40.8%
5044388 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 40.0 4.31e-01 96.9% 100.0%
5049808 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.55 41.0 3.66e-01 83.1% 55.3%
5076824 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 43.0 2.71e-01 100.0% 16.1%
3931161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 39.0 3.37e-01 100.0% 45.2%
3761598 2008.1.1.29 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.54 44.0 2.99e-01 100.0% 21.0%
5009492 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.53 39.0 3.50e-01 84.6% 71.2%
4938633 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 38.0 3.17e-01 98.5% 40.0%
3174293 101.1.2.284 ↗ alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.52 42.0 3.06e-01 98.5% 31.5%
3512778 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.52 46.0 4.08e-01 100.0% 76.8%
4616279 375.1.1.95 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_13 0.52 36.0 3.67e-01 100.0% 75.4%
3601331 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 2.80e-01 76.9% 80.3%
5081486 3425.2.1.0 ↗ a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain 0.51 42.0 2.96e-01 98.5% 98.8%
3535427 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 38.0 2.41e-01 86.2% 16.4%
3518293 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.50 38.0 3.23e-01 98.5% 47.8%