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MT732475.1__QQV91575.1__Peternella1_39__00039

Bact-Vir

MT732475.1__QQV91575.1__Peternella1_39__00039

Identity

Accession:
MT732475 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-121_171-206
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bf0C03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.86 65.0 6.31e-01 77.3% 83.2%
4jcqA00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.86 66.0 6.33e-01 78.6% 94.1%
5e0sB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.82 65.0 5.85e-01 81.2% 87.1%
2f9iD00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.80 69.0 5.73e-01 90.9% 74.5%
5wydA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.77 68.0 6.08e-01 91.6% 92.2%
2ppyA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.77 68.0 6.07e-01 91.6% 91.7%
3ot6A00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.77 67.0 5.77e-01 90.9% 79.6%
4jotA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.77 68.0 6.02e-01 92.2% 92.5%
1ef8A02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.77 67.0 6.36e-01 91.6% 100.0%
1y7oB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.76 66.0 6.25e-01 90.3% 98.9%
3l3sA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.76 65.0 5.95e-01 89.6% 92.8%
1pixA02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.75 65.0 5.67e-01 92.2% 85.6%
7ekqA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.74 65.0 5.96e-01 90.9% 92.6%
3gkbA00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.73 69.0 5.57e-01 100.0% 96.7%
3peaF00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.71 66.0 5.46e-01 98.1% 96.5%
3hp0A00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.71 67.0 5.54e-01 99.4% 98.0%
4l6wB01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.71 59.0 5.67e-01 91.6% 77.6%
4jyjB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.70 65.0 5.28e-01 97.4% 95.5%
6j0pA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.70 65.0 5.45e-01 99.4% 100.0%
4qtpD00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.68 47.0 5.29e-01 84.4% 93.9%
2ookA00 3.40.50.10600 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SpoIIaa-like domains 0.67 50.0 5.53e-01 83.8% 95.2%
1vc1A00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.66 45.0 5.27e-01 85.7% 99.1%
1vypX00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 52.0 4.00e-01 93.5% 68.0%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 47.0 4.20e-01 83.8% 70.7%
3vk5B00 3.20.20.390 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases 0.59 46.0 3.97e-01 83.1% 54.0%
3hpxA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 51.0 4.13e-01 93.5% 59.1%
3a9iA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 51.0 4.26e-01 93.5% 66.7%
2nw0A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 47.0 4.40e-01 91.6% 69.3%
2yk4A01 3.30.370.20 Alpha Beta › 2-Layer Sandwich › Barnase; Chain D › 0.58 32.0 4.08e-01 85.1% 96.3%
5b7yA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.58 50.0 4.15e-01 92.9% 75.8%
4g56A01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.58 50.0 4.10e-01 92.9% 62.2%
3ve9A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 44.0 4.05e-01 82.5% 61.3%
7d88A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 50.0 3.80e-01 93.5% 62.9%
2vldA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.57 32.0 3.72e-01 95.5% 76.1%
3b8iC00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.57 45.0 3.71e-01 83.8% 62.6%
1mzhA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 47.0 4.18e-01 91.6% 65.3%
1t71A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 45.0 3.70e-01 85.7% 81.5%
3a3dA02 3.50.80.20 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 0.56 34.0 3.98e-01 84.4% 89.2%
1t70A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.55 44.0 3.77e-01 85.7% 87.5%
2jjmA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 46.0 4.42e-01 90.9% 87.8%
3b2nA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 33.0 3.69e-01 81.2% 76.7%
4efzB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 49.0 4.03e-01 100.0% 87.9%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 29.0 3.70e-01 89.6% 90.7%
1zlpA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.54 46.0 3.77e-01 92.9% 60.2%
1d7aA00 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 39.0 3.93e-01 77.3% 75.2%
6gs8A01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.53 46.0 3.76e-01 96.8% 62.8%
4rxuA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 39.0 4.04e-01 77.3% 99.3%
1ujnA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 40.0 4.01e-01 79.9% 82.6%
3sg0A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 42.0 4.22e-01 88.3% 87.5%
1w5dA02 3.50.80.20 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 0.51 32.0 3.67e-01 89.6% 90.2%
1y7pB02 3.40.50.10550 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein af1403; domain 2 0.51 37.0 3.88e-01 74.0% 96.4%
1peaA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 43.0 4.14e-01 93.5% 82.4%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026361 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.87 65.0 5.67e-01 76.6% 91.6%
4356494 2486.1.1.14 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 0.86 67.0 5.31e-01 79.9% 78.9%
5043495 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.85 64.0 5.13e-01 76.6% 72.6%
4131089 2486.1.1.14 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 0.85 64.0 5.41e-01 77.9% 82.5%
4932322 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.84 64.0 5.23e-01 78.6% 77.4%
3970789 2486.1.1.0 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase 0.84 63.0 5.95e-01 77.3% 95.0%
4029606 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.83 66.0 5.71e-01 81.2% 78.6%
3968025 2486.1.1.17 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › NfeD1b_N 0.83 62.0 5.37e-01 76.6% 77.8%
5006094 2486.1.1.17 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › NfeD1b_N 0.83 62.0 5.50e-01 76.6% 77.6%
5064223 2486.1.1.17 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › NfeD1b_N 0.83 62.0 5.47e-01 77.3% 76.3%
5032586 2486.1.1.17 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › NfeD1b_N 0.83 62.0 5.03e-01 77.3% 60.0%
5042373 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.82 64.0 5.32e-01 79.2% 85.7%
5019448 2486.1.1.17 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › NfeD1b_N 0.82 62.0 5.27e-01 77.3% 70.6%
3165505 2486.1.1.13 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49+Peptidase_S49_N 0.82 64.0 4.75e-01 79.9% 74.5%
4616147 2486.1.1.17 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › NfeD1b_N 0.82 61.0 5.52e-01 77.3% 84.4%
5043980 2486.1.1.17 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › NfeD1b_N 0.81 61.0 5.54e-01 77.3% 83.5%
4984001 2486.1.1.17 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › NfeD1b_N 0.81 62.0 5.43e-01 77.9% 75.8%
3972367 2486.1.1.0 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase 0.80 59.0 5.84e-01 76.6% 100.0%
5071469 2486.1.1.17 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › NfeD1b_N 0.78 63.0 5.06e-01 85.1% 70.5%
3328582 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.77 66.0 5.70e-01 89.6% 90.7%
4127180 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.76 66.0 6.02e-01 90.3% 89.2%
4129382 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.75 66.0 6.11e-01 90.3% 96.2%
4972325 2486.1.1.17 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › NfeD1b_N 0.74 61.0 4.97e-01 85.7% 63.8%
359826 2486.1.1.1 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 0.74 69.0 5.61e-01 100.0% 96.7%
4577906 2486.1.1.1 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 0.70 66.0 5.29e-01 99.4% 91.8%
4259068 2486.1.1.14 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 0.69 65.0 4.25e-01 99.4% 89.0%
11465 2496.1.1.4 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › SpoIIAA-like 0.67 50.0 5.53e-01 83.8% 95.2%
5044211 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 49.0 3.56e-01 80.5% 44.3%
4978576 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.64 46.0 3.75e-01 79.9% 40.0%
4961034 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 36.0 4.16e-01 98.1% 76.4%
5065527 2002.1.1.36 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.60 45.0 3.62e-01 78.6% 51.0%
1242171 2002.1.1.78 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PcrB 0.59 47.0 4.03e-01 85.1% 54.3%
4980036 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 37.0 4.25e-01 87.0% 86.4%
4295126 2002.1.1.176 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEP_mutase 0.58 46.0 3.79e-01 84.4% 91.4%
4153569 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.57 46.0 4.79e-01 92.2% 91.0%
4377271 7573.1.1.9 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran, Pribosyl_synth 0.57 46.0 4.43e-01 92.2% 74.2%
5077266 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.57 33.0 3.62e-01 78.6% 66.9%
4945273 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 32.0 3.74e-01 98.1% 76.4%
None 0.57 49.0 3.83e-01 94.2% 71.1%
5030624 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.56 33.0 3.81e-01 94.2% 81.9%
4938264 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.56 33.0 3.61e-01 93.5% 70.4%
5003652 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 32.0 3.57e-01 96.1% 72.2%
7873 246.2.1.10 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › YmdB 0.56 45.0 3.70e-01 85.7% 81.5%
5008130 213.1.1.35 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_CG 0.55 33.0 3.96e-01 90.9% 93.7%
5063937 2002.1.1.39 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 0.55 44.0 3.07e-01 87.0% 36.6%
3588670 246.2.1.10 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › YmdB 0.55 44.0 3.70e-01 85.7% 86.2%
5039590 7512.1.1.13 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › PS_pyruv_trans 0.54 46.0 4.23e-01 93.5% 98.0%
3841401 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.54 44.0 4.19e-01 92.2% 74.6%
5063787 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.53 33.0 3.60e-01 92.9% 73.6%
3989346 2002.1.1.38 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TAL_FSA 0.53 41.0 3.70e-01 83.1% 65.5%
3227733 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 43.0 3.90e-01 89.0% 77.6%
4953911 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.52 32.0 3.60e-01 88.3% 80.0%
5055610 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.52 32.0 3.38e-01 91.6% 67.4%
3469374 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 43.0 3.14e-01 90.3% 47.6%
4024064 2499.1.1.0 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.51 44.0 3.32e-01 92.9% 72.4%
3353667 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.50 36.0 3.77e-01 93.5% 77.9%
D2 high residues 283-323
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vfrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.84 60.0 3.68e-01 78.0% 14.3%
1r71A02 6.10.250.140 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.83 68.0 6.12e-01 92.7% 67.2%
3of4A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.78 56.0 3.54e-01 78.0% 15.5%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.76 63.0 5.11e-01 100.0% 69.4%
4zqeA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.74 62.0 4.82e-01 100.0% 75.0%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.74 62.0 4.95e-01 100.0% 71.6%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.72 59.0 4.78e-01 100.0% 71.3%
1vq8P03 1.10.1200.60 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.71 59.0 5.50e-01 100.0% 80.0%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.71 58.0 4.82e-01 100.0% 69.1%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.71 57.0 5.36e-01 100.0% 74.5%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.68 54.0 4.31e-01 100.0% 67.7%
1on2A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.68 50.0 4.48e-01 87.8% 55.6%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 53.0 4.27e-01 100.0% 69.1%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 52.0 4.05e-01 100.0% 60.7%
2hpsA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.65 52.0 3.51e-01 100.0% 40.8%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.64 52.0 4.03e-01 100.0% 67.6%
1zv1A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 54.0 4.88e-01 100.0% 74.6%
2n7zA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.64 55.0 4.12e-01 100.0% 47.2%
3gueB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.64 51.0 3.05e-01 100.0% 47.6%
1ztdA00 1.10.1520.20 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III 0.64 56.0 3.94e-01 100.0% 48.0%
1ynbA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.63 51.0 3.49e-01 100.0% 65.3%
5o7oC01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.63 52.0 3.82e-01 100.0% 64.8%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 50.0 4.04e-01 100.0% 68.8%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 50.0 3.85e-01 100.0% 55.6%
2dzlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 46.0 4.15e-01 100.0% 56.1%
2l2dA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 46.0 4.00e-01 100.0% 50.7%
2l4eA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.60 44.0 4.21e-01 100.0% 64.9%
3bm1A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.60 46.0 3.20e-01 100.0% 46.3%
2px0A01 1.20.120.1380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain 0.60 46.0 4.10e-01 100.0% 94.5%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 45.0 4.15e-01 100.0% 61.7%
1v92A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 42.0 4.14e-01 100.0% 71.7%
2jp7A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 44.0 4.14e-01 100.0% 64.9%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.58 43.0 4.28e-01 95.1% 93.8%
1tr8A02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.58 43.0 4.33e-01 100.0% 94.9%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 42.0 3.50e-01 97.6% 70.6%
2yfqB01 1.10.8.1210 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 40.0 3.82e-01 100.0% 71.2%
2oq1A02 1.10.930.10 Mainly Alpha › Orthogonal Bundle › Syk Kinase; Chain A, domain 2 › Syk Kinase; Chain A, domain 2 0.52 36.0 3.59e-01 80.5% 71.1%
1zq3P00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 36.0 3.17e-01 75.6% 58.8%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3181588 2004.1.1.366 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NPHP3_N 0.76 65.0 3.93e-01 100.0% 16.7%
60261 166.1.1.0 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C 0.74 61.0 4.83e-01 100.0% 63.2%
4952257 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.74 51.0 3.88e-01 78.0% 29.8%
3215025 632.2.1.38 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › Pmp3 0.73 57.0 5.29e-01 90.2% 68.5%
5070580 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.72 61.0 5.49e-01 100.0% 88.1%
3805873 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.70 57.0 5.40e-01 92.7% 78.0%
3595001 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.70 54.0 5.32e-01 100.0% 82.2%
4024271 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.69 54.0 3.97e-01 100.0% 65.9%
3734793 222.1.1.15 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3C 0.67 59.0 3.79e-01 100.0% 29.2%
5023598 4952.1.1.0 alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like 0.67 53.0 3.99e-01 87.8% 66.0%
4976690 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 54.0 5.18e-01 100.0% 90.0%
3676971 143.1.1.3 alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › MLLE_2 0.67 54.0 4.85e-01 100.0% 75.4%
5026540 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.66 52.0 4.10e-01 100.0% 70.5%
4168206 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.65 51.0 4.33e-01 100.0% 77.5%
4030158 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.65 51.0 5.05e-01 100.0% 88.9%
5078898 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.65 50.0 3.93e-01 100.0% 66.4%
3661336 143.1.1.3 alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › MLLE_2 0.65 52.0 4.39e-01 100.0% 59.5%
5006371 4049.1.1.0 alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like 0.64 51.0 4.73e-01 100.0% 91.7%
4928339 102.3.1.1 alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha 0.64 52.0 4.24e-01 97.6% 76.5%
3501828 103.1.1.84 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28540 0.64 48.0 4.62e-01 97.6% 72.0%
3392055 103.1.1.143 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_ARIH2_N 0.62 50.0 4.50e-01 92.7% 65.0%
4321594 4952.1.1.0 alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like 0.62 53.0 3.85e-01 95.1% 63.6%
3197246 3721.1.1.0 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain 0.62 48.0 4.31e-01 100.0% 62.9%
3658332 103.1.1.14 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.62 47.0 4.54e-01 100.0% 74.0%
3557283 103.1.1.28 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_8 0.62 47.0 4.53e-01 100.0% 74.0%
3272149 103.1.1.14 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.62 47.0 4.65e-01 100.0% 82.2%
3224177 103.1.1.14 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.62 47.0 4.62e-01 100.0% 82.2%
3832034 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.61 49.0 4.54e-01 100.0% 68.3%
4001580 103.1.1.14 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.61 47.0 4.62e-01 100.0% 82.2%
4373562 103.1.1.14 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.61 47.0 4.79e-01 100.0% 92.5%
163972 103.1.1.28 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_8 0.61 46.0 4.15e-01 100.0% 56.1%
3621722 103.1.1.14 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.61 46.0 4.59e-01 100.0% 82.2%
3789667 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.61 46.0 4.54e-01 100.0% 82.2%
396389 632.2.1.2 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › B 0.61 47.0 4.50e-01 100.0% 83.0%
3749044 103.1.1.14 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.60 44.0 4.13e-01 100.0% 61.7%
3517981 186.1.1.11 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_2 0.59 45.0 3.62e-01 100.0% 78.1%
4669159 103.1.1.14 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.59 42.0 4.31e-01 97.6% 90.0%
3406664 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.58 43.0 3.84e-01 100.0% 53.3%
4199673 103.1.1.19 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › HYPK_UBA 0.56 44.0 4.45e-01 100.0% 92.5%
4951061 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.56 41.0 4.20e-01 100.0% 92.5%
3924698 103.1.1.14 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.55 40.0 4.04e-01 100.0% 86.7%
3358659 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.55 41.0 4.13e-01 100.0% 97.5%
3368577 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.55 41.0 3.85e-01 100.0% 63.1%
3398979 103.1.1.14 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.54 39.0 3.95e-01 92.7% 90.0%
3530883 103.1.1.28 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_8 0.54 39.0 3.93e-01 100.0% 86.7%
3941050 103.1.1.28 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_8 0.54 40.0 4.01e-01 100.0% 97.5%
3995392 103.1.1.14 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.54 40.0 3.98e-01 100.0% 86.7%
3850388 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.53 40.0 3.91e-01 100.0% 78.0%