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MT732475.1__QQV91580.1__Peternella1_44__00044
Bact-VirMT732475.1__QQV91580.1__Peternella1_44__00044
Identity
- Accession:
- MT732475 ↗
- Kingdom:
- phage
Quality
91.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Winoviridae›
Peternellavirus›
Winogradskyella_phage_Peternella_1
TaxID: 2745699
Cluster
View cluster (16 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-221_257-280
Domain cluster:
rep: KT624200.1__AMM44842.1__SP15_043__00044__D22-84_198-292
CATH (53)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kp1A04 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.69 | 42.0 | 5.06e-01 | 88.7% | 88.7% |
| 2b99C00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.67 | 44.0 | 5.25e-01 | 100.0% | 96.7% |
| 4rshA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.65 | 49.0 | 5.49e-01 | 86.0% | 98.9% |
| 1xrsB02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.65 | 41.0 | 4.76e-01 | 88.7% | 86.9% |
| 1ivnA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.64 | 49.0 | 5.44e-01 | 88.2% | 98.9% |
| 2wicA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 43.0 | 4.93e-01 | 88.2% | 94.3% |
| 1wmdA01 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.62 | 59.0 | 5.16e-01 | 100.0% | 90.2% |
| 2c42A02 | 3.40.50.920 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 41.0 | 4.72e-01 | 93.2% | 93.0% |
| 4c7oA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 40.0 | 4.27e-01 | 100.0% | 73.7% |
| 4bjhB01 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.61 | 33.0 | 3.91e-01 | 88.2% | 76.2% |
| 1toaA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.59 | 35.0 | 4.20e-01 | 87.3% | 87.4% |
| 4v15A02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.58 | 40.0 | 4.04e-01 | 100.0% | 69.1% |
| 1szpB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 38.0 | 3.88e-01 | 100.0% | 66.8% |
| 5z3kB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 48.0 | 4.17e-01 | 87.3% | 84.9% |
| 2bb0A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.57 | 46.0 | 4.18e-01 | 100.0% | 62.4% |
| 2pljA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.57 | 41.0 | 4.13e-01 | 91.0% | 72.1% |
| 1vkhA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 44.0 | 4.18e-01 | 80.5% | 94.6% |
| 3douA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 37.0 | 4.11e-01 | 99.1% | 82.9% |
| 4zwnB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 45.0 | 3.99e-01 | 83.3% | 95.5% |
| 1thtA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 45.0 | 4.10e-01 | 83.7% | 86.4% |
| 2gj8D00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 40.0 | 4.50e-01 | 87.8% | 94.2% |
| 3ppiC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 49.0 | 4.67e-01 | 93.2% | 97.6% |
| 1jmkC01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 40.0 | 4.51e-01 | 80.1% | 97.1% |
| 1fjhA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 48.0 | 4.75e-01 | 95.0% | 99.6% |
| 1uhvA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 49.0 | 4.20e-01 | 96.8% | 88.4% |
| 8a57D02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 40.0 | 4.25e-01 | 87.8% | 86.4% |
| 4r9xA00 | 3.20.20.380 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Copper homeostasis (CutC) domain | 0.54 | 41.0 | 4.08e-01 | 98.6% | 76.3% |
| 5bjuA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 49.0 | 4.36e-01 | 98.2% | 83.6% |
| 3h7aA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 47.0 | 4.82e-01 | 100.0% | 98.1% |
| 1wzaA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 42.0 | 3.67e-01 | 100.0% | 54.1% |
| 4u5qB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 49.0 | 3.94e-01 | 100.0% | 87.6% |
| 4f8xA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 47.0 | 4.13e-01 | 96.4% | 74.6% |
| 1dg3A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 44.0 | 4.31e-01 | 87.8% | 85.0% |
| 2j62A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 46.0 | 4.13e-01 | 100.0% | 65.8% |
| 1gy8D02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 49.0 | 4.83e-01 | 100.0% | 99.1% |
| 1kc0A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 48.0 | 4.37e-01 | 100.0% | 93.3% |
| 1jfrA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 47.0 | 4.50e-01 | 98.2% | 97.7% |
| 4zxoA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 48.0 | 4.13e-01 | 100.0% | 94.5% |
| 3gzdA03 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 39.0 | 4.17e-01 | 100.0% | 88.1% |
| 7wgrA02 | 3.40.50.12470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 40.0 | 3.82e-01 | 80.1% | 95.8% |
| 7crnA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 43.0 | 4.10e-01 | 87.3% | 95.7% |
| 7dfqA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 46.0 | 4.13e-01 | 98.6% | 87.1% |
| 5a6sA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 42.0 | 4.47e-01 | 89.1% | 98.5% |
| 8b73B01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 45.0 | 3.99e-01 | 100.0% | 64.8% |
| 1ctnA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 47.0 | 4.03e-01 | 100.0% | 71.5% |
| 3lgdA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 47.0 | 3.65e-01 | 100.0% | 55.2% |
| 4ff5A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 41.0 | 4.06e-01 | 88.7% | 81.1% |
| 4jz5A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 42.0 | 4.41e-01 | 88.7% | 97.1% |
| 4tqgA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 47.0 | 4.23e-01 | 100.0% | 92.9% |
| 6xl1A01 | 3.40.50.10770 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) | 0.50 | 35.0 | 4.02e-01 | 78.3% | 98.7% |
| 4kreA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 41.0 | 3.91e-01 | 85.5% | 73.9% |
| 2r3bA01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 43.0 | 4.02e-01 | 91.9% | 80.7% |
| 3ls9A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.50 | 44.0 | 3.86e-01 | 100.0% | 63.9% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3164915 | 3019.1.1.11 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Phage_sheath_1 | 0.76 | 69.0 | 6.88e-01 | 100.0% | 92.4% |
| 5060661 | 2499.2.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 | 0.76 | 69.0 | 6.61e-01 | 100.0% | 84.0% |
| 4065889 | 2007.1.12.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase | 0.69 | 40.0 | 3.68e-01 | 86.9% | 43.9% |
| 5044220 | 2007.1.2.50 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peptidase_S8 | 0.66 | 43.0 | 4.97e-01 | 100.0% | 90.0% |
| 4577399 | 2007.1.13.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase | 0.64 | 40.0 | 4.60e-01 | 88.7% | 83.6% |
| 2527723 | 2007.12.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Beta-D-glucan exohydrolase, C-terminal domain › Beta-D-glucan exohydrolase, C-terminal domain | 0.64 | 42.0 | 4.77e-01 | 98.2% | 88.3% |
| 5052011 | 2007.2.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins | 0.63 | 44.0 | 5.08e-01 | 88.7% | 99.4% |
| 4396205 | 2007.1.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 | 0.63 | 37.0 | 4.47e-01 | 100.0% | 89.3% |
| 3346163 | 2003.1.1.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Slo-like_RCK | 0.60 | 41.0 | 4.71e-01 | 92.8% | 92.1% |
| 4410278 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.60 | 41.0 | 4.59e-01 | 92.8% | 86.9% |
| 3893786 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.60 | 45.0 | 4.72e-01 | 88.2% | 84.5% |
| 3949685 | 2004.1.1.474 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N, MMR_HSR1 | 0.60 | 44.0 | 4.87e-01 | 86.4% | 93.9% |
| 4126648 | 2003.1.1.120 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD-bd_HRPKS_sdrA | 0.59 | 42.0 | 4.60e-01 | 95.9% | 85.9% |
| 5074446 | 2004.1.1.119 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA | 0.59 | 45.0 | 4.74e-01 | 88.7% | 89.6% |
| 3271634 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.58 | 44.0 | 4.48e-01 | 97.7% | 77.7% |
| 5071446 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.58 | 45.0 | 4.07e-01 | 100.0% | 59.7% |
| 4975717 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.58 | 43.0 | 4.75e-01 | 88.7% | 96.0% |
| 4673181 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.57 | 43.0 | 4.62e-01 | 88.2% | 92.4% |
| 4100871 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.57 | 38.0 | 4.06e-01 | 99.1% | 76.4% |
| 5077198 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.57 | 44.0 | 4.69e-01 | 88.7% | 91.8% |
| 3579373 | 7579.1.1.59 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LIDHydrolase | 0.57 | 45.0 | 3.95e-01 | 82.8% | 99.7% |
| 1349789 | 2002.1.1.119 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › CutC | 0.56 | 41.0 | 4.10e-01 | 100.0% | 72.4% |
| 4030295 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.56 | 46.0 | 4.75e-01 | 88.2% | 93.1% |
| 3945989 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.56 | 41.0 | 4.13e-01 | 87.3% | 72.6% |
| 4948507 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.56 | 43.0 | 4.55e-01 | 100.0% | 89.4% |
| 4444241 | 2003.1.5.364 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › NAD_binding_4, Methyltransf_12 | 0.56 | 51.0 | 3.57e-01 | 100.0% | 50.5% |
| 3655646 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 46.0 | 4.37e-01 | 88.2% | 80.4% |
| 5074263 | 2003.6.1.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK | 0.55 | 47.0 | 3.58e-01 | 89.1% | 94.7% |
| 4242927 | 7529.1.1.3 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N | 0.55 | 38.0 | 4.33e-01 | 71.5% | 91.2% |
| 4060028 | 2003.1.1.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_4 | 0.55 | 51.0 | 4.10e-01 | 100.0% | 84.4% |
| 3179983 | 2003.1.1.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_4 | 0.55 | 51.0 | 4.08e-01 | 100.0% | 84.2% |
| 3956749 | 7579.1.1.92 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Abhydrolase_6 | 0.55 | 44.0 | 3.93e-01 | 84.6% | 96.5% |
| 4132217 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.55 | 51.0 | 4.43e-01 | 100.0% | 92.4% |
| 3179682 | 2003.1.1.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_4 | 0.55 | 50.0 | 4.08e-01 | 100.0% | 86.2% |
| 2767855 | 7579.1.1.35 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PGAP1 | 0.55 | 44.0 | 4.29e-01 | 84.6% | 100.0% |
| 4019116 | 2003.1.1.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_4 | 0.55 | 50.0 | 4.04e-01 | 100.0% | 87.9% |
| 4979159 | 2002.4.1.3 ↗ | a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase_C | 0.55 | 38.0 | 3.38e-01 | 84.6% | 48.6% |
| None | — | 0.55 | 50.0 | 4.25e-01 | 100.0% | 92.9% | |
| 4972781 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.55 | 42.0 | 4.41e-01 | 100.0% | 88.7% |
| 4162123 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.54 | 44.0 | 3.64e-01 | 84.6% | 75.8% |
| 4978099 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.54 | 49.0 | 4.21e-01 | 96.8% | 87.1% |
| 4075097 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.54 | 39.0 | 4.11e-01 | 72.9% | 92.7% |
| 3420230 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.54 | 42.0 | 4.57e-01 | 88.2% | 97.3% |
| 3938581 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.54 | 39.0 | 4.26e-01 | 98.2% | 91.4% |
| 3439933 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.54 | 43.0 | 4.04e-01 | 100.0% | 69.4% |
| 3315370 | 2003.1.1.135 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Castor_Poll_mid | 0.53 | 40.0 | 4.35e-01 | 100.0% | 91.9% |
| 3388088 | 7580.1.1.1 ↗ | a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 | 0.53 | 30.0 | 3.71e-01 | 79.2% | 88.1% |
| 3547839 | 323.1.1.20 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding,ACAS_N | 0.53 | 38.0 | 3.48e-01 | 73.3% | 64.6% |
| 4534207 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.53 | 44.0 | 4.59e-01 | 88.2% | 94.3% |
| 1495412 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.53 | 44.0 | 3.52e-01 | 88.7% | 59.1% |
| 3934219 | 323.1.1.20 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding,ACAS_N | 0.52 | 38.0 | 3.57e-01 | 73.3% | 69.8% |
| 4236813 | 2003.1.1.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_4 | 0.52 | 47.0 | 3.83e-01 | 100.0% | 85.9% |
| 3797689 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.51 | 37.0 | 3.53e-01 | 73.3% | 69.4% |
| 1066802 | 2002.1.1.55 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_25 | 0.51 | 41.0 | 4.06e-01 | 88.7% | 81.1% |
| 3243516 | 2002.1.1.290 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF31264 | 0.51 | 38.0 | 3.84e-01 | 100.0% | 75.1% |
| 3882140 | 2004.1.1.523 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › URGCP_GTPase | 0.51 | 42.0 | 3.95e-01 | 88.2% | 74.2% |
| 4934265 | 2007.6.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain | 0.51 | 38.0 | 3.94e-01 | 100.0% | 82.4% |
| 4087732 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.50 | 46.0 | 3.57e-01 | 100.0% | 88.7% |
| 3648917 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.50 | 42.0 | 3.89e-01 | 88.7% | 91.9% |
D2
medium
residues 222-256_281-303
Domain cluster:
representative
D3
medium
residues 332-410
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4atnA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.72 | 46.0 | 3.44e-01 | 79.7% | 28.0% |
| 1pu1A00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.70 | 51.0 | 4.89e-01 | 82.3% | 67.0% |
| 2jdjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 42.0 | 3.83e-01 | 81.0% | 48.1% |
| 8f4rA02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.67 | 47.0 | 4.39e-01 | 83.5% | 60.4% |
| 2onfA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.65 | 48.0 | 4.09e-01 | 79.7% | 57.5% |
| 3w9iA06 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.64 | 44.0 | 4.06e-01 | 83.5% | 55.9% |
| 2pgcA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 39.0 | 3.57e-01 | 70.9% | 46.2% |
| 1tuwA00 | 3.30.70.1090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. | 0.63 | 38.0 | 3.43e-01 | 70.9% | 43.4% |
| 5b08A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 41.0 | 3.80e-01 | 81.0% | 53.0% |
| 2fb0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 38.0 | 3.62e-01 | 82.3% | 51.1% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 39.0 | 3.61e-01 | 81.0% | 49.5% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 38.0 | 3.58e-01 | 81.0% | 51.0% |
| 2gffA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 37.0 | 3.50e-01 | 82.3% | 50.0% |
| 3e8oB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 36.0 | 3.33e-01 | 72.2% | 48.0% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.58 | 39.0 | 2.71e-01 | 70.9% | 20.0% |
| 3bn7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 38.0 | 3.49e-01 | 81.0% | 53.9% |
| 3c1aA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 39.0 | 3.24e-01 | 81.0% | 40.0% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 37.0 | 3.38e-01 | 82.3% | 50.5% |
| 1emsA02 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.55 | 41.0 | 3.53e-01 | 82.3% | 49.2% |
| 1av5A00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.55 | 41.0 | 3.65e-01 | 79.7% | 55.8% |
| 5xzqF00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 37.0 | 3.40e-01 | 81.0% | 53.4% |
| 3i4hX02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 39.0 | 3.60e-01 | 77.2% | 59.6% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.54 | 40.0 | 3.69e-01 | 81.0% | 72.6% |
| 1yk9A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.53 | 37.0 | 2.88e-01 | 72.2% | 74.5% |
| 1r6yA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 36.0 | 3.32e-01 | 81.0% | 53.4% |
| 1tr0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 36.0 | 3.28e-01 | 81.0% | 51.9% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 34.0 | 3.13e-01 | 81.0% | 50.5% |
| 1s7iA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.52 | 37.0 | 3.23e-01 | 75.9% | 83.9% |
| 1wznA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 36.0 | 2.82e-01 | 74.7% | 93.1% |
| 1mwqA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.51 | 35.0 | 3.31e-01 | 72.2% | 85.0% |
| 1dw9A02 | 3.30.1160.10 | Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain | 0.50 | 36.0 | 3.80e-01 | 77.2% | 97.1% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3980756 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.76 | 63.0 | 5.69e-01 | 98.7% | 67.6% |
| 2907089 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.72 | 51.0 | 4.49e-01 | 82.3% | 51.8% |
| 4957559 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.70 | 59.0 | 5.46e-01 | 92.4% | 72.0% |
| 3198960 | 304.20.1.2 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 | 0.69 | 53.0 | 4.19e-01 | 82.3% | 41.2% |
| 2323990 | 327.13.1.10 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › SpoIIIAG_C | 0.63 | 43.0 | 3.64e-01 | 72.2% | 79.1% |
| 4898995 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.63 | 41.0 | 3.99e-01 | 83.5% | 58.9% |
| 3652921 | 309.1.1.4 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C | 0.63 | 48.0 | 3.39e-01 | 81.0% | 28.5% |
| 3837425 | 3922.1.1.336 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › POL3_N | 0.61 | 45.0 | 4.08e-01 | 77.2% | 65.7% |
| 1312370 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.61 | 42.0 | 3.76e-01 | 84.8% | 50.0% |
| 4513312 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.61 | 39.0 | 3.22e-01 | 82.3% | 35.2% |
| 3827631 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.60 | 37.0 | 3.12e-01 | 81.0% | 34.3% |
| 4100576 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.59 | 40.0 | 3.77e-01 | 82.3% | 56.0% |
| 3385833 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.59 | 45.0 | 2.94e-01 | 82.3% | 38.1% |
| 3800859 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 44.0 | 3.26e-01 | 78.5% | 34.0% |
| 4590232 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.59 | 48.0 | 4.21e-01 | 93.7% | 80.8% |
| 3484890 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.59 | 45.0 | 4.26e-01 | 82.3% | 90.5% |
| 1731578 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.58 | 39.0 | 3.57e-01 | 82.3% | 51.9% |
| 3375055 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.58 | 43.0 | 3.97e-01 | 78.5% | 64.0% |
| 5055110 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.58 | 45.0 | 3.96e-01 | 84.8% | 84.2% |
| 4681320 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.58 | 43.0 | 3.92e-01 | 83.5% | 79.1% |
| 3734371 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.57 | 38.0 | 3.41e-01 | 81.0% | 47.0% |
| 4974677 | 312.1.1.0 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related | 0.57 | 42.0 | 3.45e-01 | 84.8% | 40.5% |
| 4399128 | 7581.1.1.30 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt, Thiolase_C | 0.56 | 38.0 | 2.51e-01 | 70.9% | 54.9% |
| 3658409 | 304.20.1.1 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind | 0.56 | 41.0 | 3.57e-01 | 84.8% | 48.1% |
| 166595 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.56 | 38.0 | 3.50e-01 | 81.0% | 54.5% |
| 4004108 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.55 | 40.0 | 2.89e-01 | 78.5% | 88.8% |
| 3281429 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 41.0 | 3.98e-01 | 81.0% | 72.2% |
| 4878866 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.54 | 39.0 | 3.51e-01 | 78.5% | 60.5% |
| 4994610 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.54 | 41.0 | 3.69e-01 | 84.8% | 61.7% |
| 5058378 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.53 | 35.0 | 3.32e-01 | 82.3% | 54.0% |
| 5052218 | 312.1.1.0 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related | 0.52 | 38.0 | 3.15e-01 | 79.7% | 40.6% |
| None | — | 0.52 | 34.0 | 3.23e-01 | 96.2% | 55.9% | |
| 4002290 | 304.20.1.3 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D6 | 0.52 | 39.0 | 3.61e-01 | 79.7% | 66.0% |
| 5053029 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 33.0 | 3.18e-01 | 70.9% | 53.7% |
| 3958166 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.52 | 38.0 | 3.25e-01 | 79.7% | 60.7% |
| 3448933 | 304.20.1.1 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind | 0.52 | 36.0 | 3.28e-01 | 82.3% | 50.0% |
| 166322 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.51 | 33.0 | 3.10e-01 | 79.7% | 51.0% |
| 3694646 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.51 | 34.0 | 2.93e-01 | 70.9% | 41.4% |