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MT740307.1__QNR53793.1__phiK7A1_003c__00003

Bact-Vir

MT740307.1__QNR53793.1__phiK7A1_003c__00003

Identity

Accession:
MT740307 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-61
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.96 72.0 6.63e-01 78.4% 64.5%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.91 83.0 6.33e-01 100.0% 46.8%
1vq8P03 1.10.1200.60 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.88 61.0 6.00e-01 72.5% 67.3%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.88 78.0 6.04e-01 100.0% 46.8%
1zmbA02 6.10.170.10 Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.87 59.0 6.86e-01 76.5% 100.0%
7nafR01 1.10.1200.240 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.86 54.0 5.49e-01 72.5% 66.0%
2o5iN07 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.85 76.0 5.76e-01 100.0% 44.0%
6lumD01 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.85 70.0 5.18e-01 98.0% 36.8%
5uh5D02 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.85 76.0 5.48e-01 100.0% 37.0%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.85 70.0 6.32e-01 90.2% 75.0%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.85 75.0 5.69e-01 100.0% 43.6%
3kd3A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.85 57.0 5.42e-01 74.5% 60.0%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.84 68.0 5.17e-01 88.2% 54.9%
3fy6A01 3.30.2210.10 Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily 0.83 66.0 5.17e-01 86.3% 41.1%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.83 73.0 6.87e-01 96.1% 81.7%
2ynqB00 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.83 70.0 4.94e-01 100.0% 31.8%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.82 56.0 4.91e-01 74.5% 49.3%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.81 69.0 5.49e-01 100.0% 46.8%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.80 57.0 5.60e-01 76.5% 70.4%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.79 69.0 6.42e-01 100.0% 87.5%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.78 55.0 5.14e-01 76.5% 60.3%
2nq5A01 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.78 70.0 4.08e-01 98.0% 90.1%
1yfmA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.78 60.0 4.49e-01 84.3% 34.1%
5mdtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.78 64.0 4.49e-01 90.2% 30.3%
2j5iA02 6.10.250.2850 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.78 52.0 5.74e-01 80.4% 94.7%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.77 66.0 5.87e-01 100.0% 66.2%
4in3B00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.76 65.0 3.64e-01 96.1% 8.7%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.75 59.0 5.00e-01 94.1% 51.7%
3iylU02 1.10.287.1520 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 63.0 6.24e-01 96.1% 92.5%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.75 65.0 4.89e-01 98.0% 41.9%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 63.0 5.61e-01 100.0% 69.2%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.74 60.0 5.77e-01 94.1% 79.3%
2fe1A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.73 56.0 4.16e-01 86.3% 33.1%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.73 61.0 4.06e-01 100.0% 23.9%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.72 56.0 3.66e-01 84.3% 22.5%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 57.0 5.60e-01 90.2% 98.2%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.71 60.0 5.19e-01 100.0% 60.5%
4jylA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.71 51.0 5.23e-01 88.2% 81.6%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.70 48.0 4.90e-01 82.4% 76.0%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.70 54.0 5.23e-01 90.2% 80.3%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 59.0 5.53e-01 98.0% 79.7%
4cpgA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.70 50.0 4.59e-01 82.4% 58.0%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.68 58.0 4.67e-01 100.0% 50.9%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.68 53.0 5.19e-01 88.2% 83.9%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.67 52.0 3.89e-01 86.3% 42.9%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.67 51.0 3.75e-01 88.2% 28.9%
2jaeA03 1.20.1440.240 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.66 57.0 4.62e-01 100.0% 58.4%
1y74A00 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.66 56.0 5.50e-01 100.0% 96.5%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.66 50.0 4.82e-01 86.3% 73.3%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.65 47.0 4.23e-01 80.4% 51.9%
2hepA00 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 48.0 5.06e-01 88.2% 97.6%
1v64A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.65 54.0 4.37e-01 100.0% 62.0%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.63 46.0 4.70e-01 86.3% 87.8%
2qkdA02 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.58 48.0 3.61e-01 100.0% 47.9%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.55 43.0 4.11e-01 98.0% 78.5%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3511354 4146.1.1.0 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.95 66.0 7.42e-01 72.5% 92.5%
4963000 192.15.1.224 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › SHOCT 0.94 88.0 7.40e-01 100.0% 63.7%
3491875 4146.1.1.0 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.94 76.0 7.17e-01 86.3% 73.3%
5013989 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.93 86.0 6.76e-01 100.0% 52.0%
3477387 103.1.1.122 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DMAP_binding 0.93 65.0 7.27e-01 74.5% 92.5%
3809254 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.93 65.0 5.87e-01 74.5% 56.9%
3842812 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.92 78.0 4.95e-01 94.1% 21.4%
3821967 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.91 65.0 5.59e-01 76.5% 50.7%
3769584 4146.1.1.4 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › FAM216B 0.91 67.0 5.70e-01 78.4% 50.0%
3218210 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.91 80.0 4.87e-01 98.0% 17.5%
3412555 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.91 76.0 5.76e-01 90.2% 41.8%
3814902 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.90 64.0 5.53e-01 76.5% 50.7%
3822871 108.1.1.23 alpha arrays › EF-hand › EF-hand-related › EF-hand › RST 0.89 64.0 5.99e-01 74.5% 63.3%
3198228 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.89 80.0 5.21e-01 100.0% 24.9%
4203622 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.88 78.0 5.29e-01 100.0% 29.1%
3662970 101.1.1.426 alpha arrays › HTH › HTH › Three-helical HTH › SAGA-Tad1 0.87 62.0 5.62e-01 74.5% 58.5%
4071991 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.87 77.0 5.17e-01 100.0% 27.6%
3742303 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.86 76.0 5.07e-01 100.0% 26.3%
3931480 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.86 74.0 6.04e-01 96.1% 53.3%
4419476 4958.1.1.1 a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.86 77.0 5.20e-01 100.0% 29.1%
4137468 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.85 75.0 5.06e-01 100.0% 27.6%
5055565 192.15.1.224 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › SHOCT 0.85 76.0 5.60e-01 100.0% 42.3%
5045646 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.85 76.0 5.43e-01 100.0% 35.7%
5032512 5086.1.1.234 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › CdvA 0.84 75.0 5.45e-01 100.0% 37.8%
3720672 109.4.1.1591 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U-box 0.84 74.0 4.56e-01 100.0% 18.2%
3691750 376.1.1.8 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.83 74.0 5.25e-01 100.0% 34.9%
5054079 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.83 72.0 6.19e-01 96.1% 61.3%
3374816 192.15.1.3 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core 0.83 75.0 5.03e-01 100.0% 29.2%
3837289 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.83 59.0 5.39e-01 76.5% 58.5%
5051746 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.83 69.0 5.93e-01 94.1% 58.7%
3802502 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.82 57.0 5.24e-01 76.5% 56.9%
4984022 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.82 74.0 5.64e-01 100.0% 44.7%
4934254 2006.1.4.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.82 66.0 4.79e-01 88.2% 33.1%
5030599 192.15.1.226 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CdvA 0.82 73.0 5.39e-01 100.0% 41.5%
3988856 4146.1.1.1 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like 0.82 73.0 6.37e-01 98.0% 67.6%
3486312 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.82 72.0 5.48e-01 100.0% 42.9%
4967342 375.1.9.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.81 70.0 5.90e-01 96.1% 58.8%
3700089 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.81 70.0 6.50e-01 98.0% 83.1%
3648733 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.80 69.0 4.60e-01 100.0% 24.3%
4647018 4958.1.1.2 a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_4 0.80 70.0 4.74e-01 100.0% 27.9%
4220406 375.1.9.14 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › GvpG 0.80 71.0 6.46e-01 100.0% 75.0%
4231910 4168.1.1.1 alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP 0.79 69.0 5.42e-01 100.0% 47.3%
5045248 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.79 67.0 5.65e-01 96.1% 56.5%
4975841 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.79 68.0 5.34e-01 96.1% 47.1%
4124570 1054.1.1.1 alpha bundles › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arg_decarbox_C 0.77 55.0 5.80e-01 84.3% 86.7%
4946898 375.1.9.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.76 64.0 5.74e-01 100.0% 66.7%
3988447 5043.1.1.0 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like 0.74 59.0 5.78e-01 94.1% 81.8%
5039692 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.73 63.0 5.20e-01 100.0% 53.7%
3403130 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.69 57.0 4.07e-01 100.0% 30.3%