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MT740307.1__QNR53874.1__phiK7A1_086__00084

Bact-Vir

MT740307.1__QNR53874.1__phiK7A1_086__00084

Identity

Accession:
MT740307 ↗
Kingdom:
phage

Quality

91.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-88
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ulyA02 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.69 44.0 4.20e-01 84.9% 55.4%
2gtvX00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.63 44.0 4.19e-01 96.5% 61.5%
3rsnA00 3.90.980.20 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › 0.59 41.0 3.37e-01 72.1% 42.4%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.59 43.0 3.42e-01 77.9% 91.1%
5ts9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.58 42.0 3.50e-01 83.7% 41.0%
4fwvA02 1.20.120.1680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 48.0 4.20e-01 96.5% 64.9%
1xeqB00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.56 38.0 3.85e-01 84.9% 70.6%
4bg5B00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.56 43.0 3.30e-01 82.6% 98.5%
1xu0A00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.56 38.0 3.63e-01 72.1% 59.8%
1vk5A00 1.20.120.690 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › RDM1 protein domain 0.55 39.0 3.53e-01 73.3% 81.8%
5aexJ00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.54 48.0 3.08e-01 100.0% 63.5%
1eiaA01 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.54 40.0 3.48e-01 79.1% 63.2%
2g3vA00 1.20.120.1140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CAG pathogenicity island protein 13, CagS 0.54 47.0 3.83e-01 97.7% 83.9%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.54 43.0 4.10e-01 98.8% 72.8%
3nrtA00 6.20.350.10 Special › Other non-globular › Actin; Chain A, domain 4 › 0.53 38.0 3.75e-01 75.6% 71.0%
7drjB01 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.52 45.0 3.50e-01 94.2% 79.2%
2kg7B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.51 40.0 3.87e-01 89.5% 74.2%
2ykgA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.50 44.0 3.82e-01 97.7% 75.2%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988108 1049.2.1.0 alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain 0.93 79.0 7.34e-01 96.5% 73.3%
4957574 1049.2.1.0 alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain 0.92 72.0 6.92e-01 97.7% 73.7%
3981239 1049.2.1.3 alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › PF26776 0.90 74.0 7.10e-01 95.3% 77.9%
3948958 1049.2.1.0 alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain 0.87 73.0 6.76e-01 95.3% 72.4%
3943565 1049.2.1.0 alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain 0.87 75.0 6.87e-01 100.0% 72.7%
4514735 1049.2.1.4 alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Baseplate_J 0.80 65.0 4.93e-01 97.7% 38.9%
3287123 4168.1.1.0 alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain 0.69 41.0 4.15e-01 100.0% 58.8%
3975961 5058.1.1.88 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_TM1 0.63 45.0 4.27e-01 96.5% 64.0%
3712866 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 46.0 4.23e-01 98.8% 64.5%
3799864 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.59 49.0 3.76e-01 91.9% 68.3%
3880178 192.8.1.92 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CUPID 0.59 43.0 4.43e-01 86.0% 82.5%
5074974 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.57 50.0 3.66e-01 97.7% 69.4%
3228432 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.57 31.0 3.70e-01 95.3% 78.3%
5003923 5042.1.1.1 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA 0.57 40.0 4.38e-01 74.4% 94.3%
3356973 5042.1.1.0 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.56 41.0 4.45e-01 77.9% 94.3%
1068675 3714.1.1.0 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.55 47.0 3.77e-01 96.5% 46.8%
3754265 603.1.1.187 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DNA_repr_REX1B 0.54 43.0 4.27e-01 84.9% 84.4%
3186578 101.38.1.2 alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › DUF7721 0.54 41.0 3.54e-01 88.4% 50.0%
3289849 191.1.1.48 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_46 0.54 41.0 3.57e-01 81.4% 57.7%
None 0.53 47.0 3.18e-01 97.7% 61.6%
3634447 4207.1.2.0 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region 0.52 41.0 3.91e-01 100.0% 71.4%
5030936 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 40.0 3.11e-01 83.7% 36.9%
3637453 5042.1.1.1 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA 0.51 37.0 3.96e-01 82.6% 94.3%
3760698 192.2.1.53 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PF31016 0.51 42.0 3.65e-01 96.5% 58.5%
4273738 5069.1.1.2 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ni_hydr_CYTB 0.50 43.0 3.22e-01 97.7% 83.8%
D2 high residues 98-269
PDB
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7sqxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 41.0 5.46e-01 72.7% 100.0%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 44.0 5.20e-01 88.4% 94.2%
1yllA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 29.0 3.86e-01 96.5% 87.0%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.56 34.0 3.97e-01 75.0% 86.2%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 28.0 3.42e-01 95.3% 71.9%
5z06B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 30.0 3.99e-01 94.2% 97.8%
3t30C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.55 32.0 4.07e-01 79.1% 100.0%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.55 33.0 4.11e-01 80.2% 100.0%
5eb9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 35.0 4.13e-01 78.5% 95.5%
3a21A03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 30.0 3.65e-01 76.2% 88.1%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 33.0 4.05e-01 76.2% 99.1%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.53 28.0 3.72e-01 76.7% 100.0%
2wzpP03 2.60.120.880 Mainly Beta › Sandwich › Jelly Rolls › 0.52 37.0 4.26e-01 79.1% 100.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 39.0 3.95e-01 77.3% 95.8%
1vw4700 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.52 22.0 2.77e-01 72.7% 61.3%
4ht1T00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 37.0 4.19e-01 89.0% 100.0%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.51 33.0 3.82e-01 75.6% 94.0%
1o91A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.50 36.0 4.08e-01 89.0% 97.7%
4zchA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.50 37.0 4.12e-01 78.5% 100.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947742 1.1.8.21 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.94 42.0 6.19e-01 100.0% 89.4%
3166067 3019.1.1.7 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Phage_sheath_domII 0.72 44.0 5.61e-01 78.5% 100.0%
3387496 3019.1.1.1 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.66 39.0 5.01e-01 77.9% 100.0%
4302659 3019.1.1.0 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.64 44.0 5.22e-01 97.7% 100.0%
3999000 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.58 30.0 4.03e-01 76.2% 97.6%
5038687 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 34.0 4.27e-01 78.5% 100.0%
1269 10.7.1.1 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 › ASRT 0.56 34.0 3.97e-01 75.0% 86.2%
3276836 10.4.1.25 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF26736 0.56 29.0 3.94e-01 75.0% 100.0%
3490350 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 19.0 2.87e-01 100.0% 75.4%
1158350 10.32.1.165 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM13-like 0.54 30.0 3.79e-01 76.2% 95.7%
3528111 10.21.1.0 beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 0.53 36.0 4.11e-01 82.6% 93.6%
5041322 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 33.0 4.04e-01 86.0% 100.0%
2553957 10.2.1.55 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.53 31.0 3.86e-01 77.9% 100.0%
3547860 10.21.1.1 beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.53 35.0 4.00e-01 83.1% 90.0%
3908103 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.53 38.0 4.29e-01 89.0% 98.5%
3620151 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 31.0 3.69e-01 75.0% 86.1%
3227152 10.4.1.19 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › Glycoprotein 0.52 32.0 3.86e-01 76.2% 93.0%
3939502 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 32.0 3.88e-01 75.0% 95.7%
3229633 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 33.0 3.93e-01 93.0% 97.4%
D3 high residues 286-384
PDB
D4 high residues 389-483
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xeaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 38.0 3.06e-01 86.3% 35.4%
4lhpF00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.54 43.0 3.85e-01 84.2% 85.4%
1afiA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 4.23e-01 74.7% 100.0%
1bekA01 1.10.520.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › 0.54 44.0 3.69e-01 90.5% 71.2%
1m1hA01 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.52 36.0 3.61e-01 73.7% 88.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943567 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.93 87.0 8.59e-01 97.9% 99.0%
4957578 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.87 77.0 7.98e-01 100.0% 98.9%
3946544 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.86 80.0 7.75e-01 100.0% 96.2%
5004557 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.84 78.0 7.43e-01 100.0% 99.1%
5002740 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.82 78.0 7.34e-01 100.0% 97.3%
4093853 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.82 67.0 7.14e-01 98.9% 98.8%
4565831 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.82 72.0 7.44e-01 100.0% 100.0%
1870475 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.78 65.0 6.71e-01 100.0% 94.5%
3279157 315.1.1.0 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF 0.61 48.0 4.40e-01 85.3% 95.2%
3580586 229.1.1.4 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › Pch2_N 0.60 48.0 4.98e-01 98.9% 94.4%
3725585 315.1.1.0 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF 0.59 47.0 3.85e-01 85.3% 77.0%
3473351 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.59 40.0 2.71e-01 70.5% 85.0%
3736384 315.1.1.6 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase_3 0.58 46.0 3.94e-01 85.3% 82.6%
3748111 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.57 44.0 3.29e-01 82.1% 80.4%
3927643 229.1.1.0 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.55 44.0 4.57e-01 98.9% 97.6%
4964549 229.1.1.1 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.53 43.0 4.33e-01 100.0% 89.5%
4488173 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 4.31e-01 87.4% 94.4%
4370646 229.1.1.6 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PEX6_4th 0.52 45.0 3.99e-01 100.0% 87.6%
3580677 229.1.1.0 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.51 42.0 4.32e-01 98.9% 96.7%