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MT740734.1__QMV32893.1__2CaD_00003__00003

Bact-Vir

MT740734.1__QMV32893.1__2CaD_00003__00003

Identity

Accession:
MT740734 ↗
Kingdom:
phage

Quality

92.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Dinavirus› Ralstonia_phage_Dina

TaxID: 2759732

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 60-125
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09436.17 best DUF2016 83.6 9.40e-24 100.0% 86.5%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.66 41.0 3.74e-01 75.8% 47.2%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.64 50.0 3.19e-01 84.8% 27.5%
2w00A01 3.90.1570.50 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.62 42.0 3.22e-01 72.7% 41.5%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.60 43.0 3.09e-01 75.8% 87.0%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.58 34.0 2.73e-01 72.7% 28.1%
2ghsA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 44.0 2.92e-01 83.3% 27.8%
2aqjA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 50.0 2.98e-01 97.0% 44.9%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.58 42.0 3.29e-01 75.8% 37.6%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.57 44.0 3.56e-01 84.8% 74.6%
2wesA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 50.0 2.95e-01 97.0% 46.2%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.57 38.0 2.84e-01 98.5% 26.9%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.56 42.0 3.36e-01 100.0% 38.7%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.56 46.0 3.52e-01 90.9% 39.6%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.55 45.0 3.50e-01 90.9% 41.1%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.55 41.0 2.52e-01 83.3% 30.0%
3hl6A01 3.30.1300.50 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Putative mobile pathogenicity island, N-terminal domain 0.54 47.0 4.57e-01 100.0% 95.9%
3e1tA02 3.30.9.100 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.54 48.0 3.57e-01 100.0% 74.1%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.54 44.0 3.53e-01 95.5% 75.9%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.54 36.0 3.02e-01 78.8% 38.7%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 36.0 2.75e-01 100.0% 30.1%
3i3lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 47.0 2.88e-01 100.0% 46.1%
7apkF01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 40.0 2.66e-01 86.4% 29.9%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 45.0 3.30e-01 95.5% 98.3%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 43.0 3.57e-01 92.4% 54.2%
6qk7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 40.0 2.59e-01 83.3% 39.9%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.52 41.0 3.19e-01 87.9% 68.2%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.52 39.0 2.89e-01 81.8% 68.6%
2xn1A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.52 45.0 2.97e-01 100.0% 94.5%
4bdxA00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.52 38.0 3.56e-01 78.8% 77.1%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.51 39.0 2.61e-01 86.4% 34.5%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.51 35.0 3.02e-01 78.8% 43.8%
2plgA01 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 44.0 3.44e-01 93.9% 68.9%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3230371 3180.1.1.0 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.67 40.0 3.39e-01 72.7% 36.4%
3707402 12.6.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.66 55.0 5.32e-01 92.4% 100.0%
4088743 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 42.0 4.44e-01 71.2% 96.7%
3984362 1.1.9.32 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TnpB_IS66 0.62 48.0 4.27e-01 83.3% 73.7%
3955351 12.6.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.62 44.0 4.57e-01 74.2% 93.3%
3248985 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 44.0 3.56e-01 77.3% 93.1%
4656410 1.1.9.32 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TnpB_IS66 0.61 46.0 4.17e-01 80.3% 76.4%
3424666 5.1.3.25 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.57 44.0 2.93e-01 84.8% 39.3%
3805475 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.57 44.0 2.85e-01 84.8% 30.8%
3688632 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 48.0 3.84e-01 97.0% 85.9%
4259150 295.1.1.46 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › WapI 0.55 44.0 3.59e-01 90.9% 52.6%
3629277 5.1.5.89 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 0.55 41.0 2.58e-01 83.3% 66.6%
3255468 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.54 39.0 2.82e-01 80.3% 43.1%
3716012 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 2.86e-01 95.5% 36.4%
3391302 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 41.0 2.65e-01 80.3% 35.0%
4002701 5.1.4.333 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF31099 0.54 40.0 2.51e-01 81.8% 20.5%
3395398 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 41.0 2.52e-01 81.8% 78.0%
3240133 5.1.4.258 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.53 45.0 2.99e-01 95.5% 48.7%
3550232 389.1.1.1 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.53 36.0 3.38e-01 72.7% 75.3%
4466055 12.3.1.25 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_36N 0.53 41.0 2.66e-01 86.4% 33.3%
5792 295.1.1.6 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.52 43.0 3.57e-01 92.4% 53.7%
None — 0.52 45.0 2.97e-01 100.0% 99.3%
3612239 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 43.0 2.81e-01 95.5% 37.7%
3868717 220.1.1.173 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERK 0.50 35.0 2.87e-01 72.7% 40.0%
3658278 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.50 45.0 2.85e-01 100.0% 26.7%
3263391 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.50 35.0 2.93e-01 72.7% 46.4%
D2 high residues 130-257
PDB
Domain cluster: rep: rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00370__D51-199
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14464.12 best Prok-JAB 68.6 6.10e-19 84.4% 88.6%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6fnnB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.81 73.0 6.96e-01 94.5% 99.3%
1oi0A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.79 62.0 6.73e-01 99.2% 97.2%
2znrA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.76 71.0 6.26e-01 99.2% 89.3%
2kksA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.75 69.0 6.63e-01 99.2% 92.5%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.75 70.0 6.63e-01 99.2% 98.6%
4f7oA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.74 69.0 5.55e-01 100.0% 65.5%
2og4A01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.72 67.0 5.36e-01 100.0% 67.2%
2kcqA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.68 61.0 5.74e-01 96.1% 90.2%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.66 61.0 5.42e-01 100.0% 89.4%
4dohE02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 32.0 3.52e-01 74.2% 56.6%
3dlaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.62 56.0 4.19e-01 100.0% 78.9%
2e11A00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.61 54.0 4.34e-01 100.0% 87.5%
3vx8A02 3.40.140.70 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain 0.61 54.0 5.04e-01 100.0% 96.3%
8c5iA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.61 54.0 4.13e-01 100.0% 81.7%
1j31A00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.59 53.0 4.26e-01 100.0% 87.0%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 30.0 3.28e-01 88.3% 57.8%
5z0uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 34.0 3.53e-01 75.0% 62.1%
4ffkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.55 41.0 4.17e-01 88.3% 79.7%
2eefA01 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.55 34.0 3.43e-01 75.0% 60.6%
3pfmA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.53 47.0 3.86e-01 100.0% 84.8%
6hq7B02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.52 46.0 3.74e-01 100.0% 84.2%
4f3hA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.52 47.0 3.81e-01 100.0% 85.0%
2r6oA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.52 46.0 3.73e-01 100.0% 75.2%
3s83A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.51 45.0 3.69e-01 100.0% 75.0%
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.51 38.0 3.22e-01 78.1% 68.0%
4q6jB00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.51 45.0 3.69e-01 100.0% 82.6%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943542 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.84 73.0 7.40e-01 90.6% 99.2%
3956284 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.83 78.0 7.44e-01 99.2% 91.7%
3968676 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.82 69.0 7.29e-01 90.6% 98.3%
5045133 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.80 75.0 7.42e-01 99.2% 97.8%
4993841 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.79 74.0 7.33e-01 100.0% 100.0%
4946921 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.78 73.0 6.47e-01 99.2% 85.7%
4952815 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.78 70.0 6.92e-01 100.0% 90.4%
5049625 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.78 68.0 7.04e-01 99.2% 99.2%
5038834 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.78 73.0 7.12e-01 100.0% 94.9%
4996288 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.77 72.0 7.08e-01 98.4% 98.5%
4153379 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.77 72.0 7.03e-01 100.0% 91.4%
3484057 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.77 72.0 6.47e-01 99.2% 94.1%
4988784 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.76 71.0 6.97e-01 100.0% 97.8%
5081359 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.76 71.0 6.36e-01 99.2% 83.5%
4402945 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.76 71.0 6.86e-01 99.2% 91.4%
4966390 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.76 66.0 6.75e-01 99.2% 95.2%
136190 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.75 69.0 6.77e-01 99.2% 97.8%
5068304 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.75 70.0 6.59e-01 99.2% 93.3%
4970360 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.75 67.0 6.70e-01 100.0% 93.1%
5029699 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.75 65.0 6.68e-01 98.4% 96.0%
4994734 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.75 65.0 6.71e-01 98.4% 98.3%
5038145 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.74 65.0 6.67e-01 100.0% 96.8%
5070642 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.72 67.0 5.57e-01 99.2% 67.0%
3668779 2492.1.1.26 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like 0.72 67.0 5.80e-01 100.0% 88.4%
5024075 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.72 64.0 6.24e-01 100.0% 87.8%
5053690 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.71 65.0 6.11e-01 99.2% 97.4%
3959898 1152.1.1.2 ↗ a+b three layers › a+b domain in conserved hypothetical protein Rv3899c › a+b domain in conserved hypothetical protein Rv3899c › a+b domain in conserved hypothetical protein Rv3899c › PF27215 0.69 51.0 5.14e-01 77.3% 100.0%
133840 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.68 61.0 5.86e-01 96.1% 95.2%
3663319 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.66 60.0 5.21e-01 100.0% 90.3%
3192440 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 36.0 3.82e-01 75.8% 65.5%
4935787 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.60 54.0 4.34e-01 99.2% 85.9%
4948543 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 30.0 3.48e-01 88.3% 66.3%
3977422 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.58 52.0 4.37e-01 98.4% 98.2%
3631697 286.1.1.0 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.58 41.0 4.57e-01 85.2% 93.0%
5005245 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 47.0 3.91e-01 91.4% 72.6%
4441821 11.1.1.46 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha-amylase_N 0.56 36.0 3.55e-01 85.2% 60.0%
3999963 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 32.0 3.27e-01 93.8% 57.7%
3962499 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 30.0 3.73e-01 75.0% 93.3%
5029740 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 33.0 3.67e-01 75.8% 81.1%
3427464 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.53 41.0 4.19e-01 82.8% 93.6%
3494613 11.1.1.54 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.52 36.0 3.35e-01 78.1% 56.2%
3218472 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 34.0 3.48e-01 98.4% 69.6%
3600630 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.51 28.0 3.65e-01 77.3% 93.3%
3498264 219.1.1.53 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin 0.51 41.0 3.33e-01 88.3% 58.8%
4009640 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.50 44.0 3.60e-01 100.0% 74.2%
D3 medium residues 1-59
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.65 47.0 4.07e-01 83.1% 48.4%
7t7kA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.59 46.0 3.58e-01 83.1% 94.1%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3447988 603.1.1.102 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF3537 0.86 63.0 4.25e-01 76.3% 24.1%
3192973 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 54.0 3.52e-01 86.4% 55.0%
7966 4330.1.1.1 ↗ few secondary structure elements › Vanabin-like › Vanabin-like › Vanabin-like › Vanabin-2 0.65 47.0 4.11e-01 83.1% 50.0%
3876711 323.1.1.26 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › GH3_N_vert 0.61 46.0 2.93e-01 79.7% 19.3%
3668680 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.59 41.0 3.39e-01 72.9% 44.0%
5037532 244.4.1.2 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases 0.51 33.0 2.60e-01 83.1% 28.9%