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MT740734.1__QMV32908.1__2CaD_00018__00018

Bact-Vir

MT740734.1__QMV32908.1__2CaD_00018__00018

Identity

Accession:
MT740734 ↗
Kingdom:
phage

Quality

89.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-59
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jrmA00 1.10.10.620 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain 0.83 70.0 6.74e-01 100.0% 81.7%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.77 56.0 5.35e-01 76.9% 80.0%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.75 52.0 5.04e-01 78.8% 65.5%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.75 56.0 5.42e-01 78.8% 82.5%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.75 52.0 4.56e-01 73.1% 51.3%
1c5aA00 1.20.91.20 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) 0.74 62.0 5.74e-01 92.3% 73.8%
6f7hA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.74 65.0 4.14e-01 100.0% 43.4%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.74 53.0 4.19e-01 76.9% 46.2%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 52.0 5.04e-01 75.0% 79.3%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.72 64.0 4.18e-01 100.0% 97.3%
1blwC00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.72 55.0 3.93e-01 82.7% 29.8%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.72 56.0 4.37e-01 84.6% 41.8%
1qdmA03 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.72 60.0 5.25e-01 92.3% 72.7%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 53.0 4.35e-01 78.8% 47.8%
6s21B01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.72 54.0 3.19e-01 80.8% 30.9%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 51.0 3.91e-01 76.9% 36.8%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 55.0 4.78e-01 84.6% 64.1%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 51.0 4.47e-01 78.8% 59.5%
2f2bA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.70 59.0 3.88e-01 100.0% 49.0%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.69 53.0 5.02e-01 82.7% 73.8%
3k2jA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.68 59.0 4.50e-01 98.1% 73.6%
5zzjA02 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.68 59.0 3.63e-01 98.1% 34.2%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.67 57.0 3.85e-01 96.2% 59.9%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.66 51.0 3.64e-01 84.6% 57.1%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 47.0 4.76e-01 76.9% 76.5%
1yrtA03 1.10.150.920 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.65 44.0 4.61e-01 71.2% 79.2%
2uvaG06 1.20.930.70 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.65 46.0 3.54e-01 75.0% 36.1%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.65 59.0 4.51e-01 98.1% 77.5%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 50.0 4.43e-01 82.7% 67.6%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.64 46.0 4.88e-01 80.8% 86.7%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.64 45.0 4.68e-01 75.0% 83.7%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.64 51.0 3.05e-01 92.3% 15.8%
1f68A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.63 50.0 4.08e-01 90.4% 81.6%
3u5nA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.63 53.0 4.16e-01 100.0% 80.8%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 53.0 4.32e-01 100.0% 88.7%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.62 51.0 4.40e-01 96.2% 84.3%
5ulcX00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.62 52.0 4.07e-01 98.1% 70.5%
4uyeA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.62 50.0 4.14e-01 100.0% 81.7%
7ud0A01 1.10.579.10 Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.62 52.0 3.64e-01 100.0% 72.5%
2dkwA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.61 50.0 3.85e-01 96.2% 65.6%
3k62A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 52.0 3.13e-01 98.1% 25.5%
2yw5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.61 50.0 3.83e-01 98.1% 64.5%
1bccH00 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.61 44.0 4.13e-01 78.8% 66.7%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.60 53.0 4.64e-01 96.2% 92.1%
1uaaA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 46.0 4.28e-01 92.3% 67.6%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 50.0 3.21e-01 98.1% 80.7%
7miqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 47.0 3.79e-01 90.4% 73.6%
2b3tB01 6.10.140.1980 Special › Helix non-globular › Helix Hairpins › 0.57 42.0 3.99e-01 82.7% 66.2%
4qmgC01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 47.0 3.37e-01 92.3% 30.2%
2v4jA01 6.10.140.1420 Special › Helix non-globular › Helix Hairpins › 0.56 40.0 3.81e-01 76.9% 66.7%
3gzfD00 1.10.150.420 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus 0.55 46.0 3.92e-01 96.2% 75.8%
4wv4B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.54 50.0 4.00e-01 100.0% 54.8%
3k3wB03 1.10.1400.10 Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region 0.51 44.0 3.16e-01 98.1% 87.4%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3581419 6028.1.1.0 alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor 0.85 62.0 6.99e-01 80.8% 100.0%
3778661 109.23.1.9 alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 › ANATO 0.85 77.0 5.87e-01 100.0% 45.6%
4407662 6028.1.1.1 alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor › RMF 0.85 70.0 6.69e-01 92.3% 78.3%
184677 6028.1.1.1 alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor › RMF 0.83 70.0 6.74e-01 100.0% 81.7%
3852964 101.1.17.14 alpha arrays › HTH › HTH › FF domain › ANATO 0.81 70.0 6.13e-01 94.2% 65.3%
3286769 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.78 58.0 4.07e-01 78.8% 92.7%
4945751 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.78 56.0 4.35e-01 76.9% 62.7%
3600606 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.76 56.0 3.82e-01 78.8% 36.0%
4225190 4207.1.2.29 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › Med4 0.74 54.0 3.93e-01 76.9% 33.3%
3505608 192.29.1.1 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.73 58.0 5.06e-01 84.6% 61.3%
3576201 10.12.1.38 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PCO_ADO 0.73 53.0 3.83e-01 76.9% 31.9%
3391939 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.72 53.0 4.08e-01 78.8% 39.1%
3336964 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.71 55.0 3.49e-01 82.7% 19.2%
4433878 1197.1.1.1 alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.71 62.0 4.02e-01 94.2% 51.4%
3909150 5063.1.1.15 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › OCIA 0.71 53.0 4.62e-01 78.8% 58.7%
4534540 3718.1.1.1 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.70 53.0 4.19e-01 82.7% 40.0%
3509923 6103.1.1.0 alpha bundles › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain 0.70 55.0 3.72e-01 84.6% 45.9%
3386463 3538.1.1.5 extended segments › MerF › MerF › MerF › FHIPEP 0.70 52.0 5.13e-01 82.7% 74.5%
4988487 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.69 51.0 4.44e-01 78.8% 54.4%
3318741 5059.1.1.55 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TauE 0.68 55.0 3.39e-01 90.4% 97.6%
3731535 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.67 50.0 4.04e-01 80.8% 70.0%
4194508 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.67 53.0 5.22e-01 92.3% 83.6%
3811877 3937.1.1.0 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 0.67 60.0 4.19e-01 100.0% 73.9%
3221764 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.67 57.0 4.97e-01 96.2% 88.7%
3998193 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 53.0 4.26e-01 92.3% 56.4%
3832382 5069.1.3.60 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › OST3_OST6 0.66 51.0 3.93e-01 84.6% 36.7%
4020549 197.1.1.3 alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.66 52.0 4.22e-01 86.5% 47.0%
3280314 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.65 54.0 5.37e-01 94.2% 87.3%
4020871 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.65 49.0 3.71e-01 82.7% 46.2%
5074716 4163.1.1.0 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.65 56.0 4.31e-01 100.0% 42.5%
5010328 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 52.0 5.18e-01 90.4% 94.5%
5022180 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 50.0 3.25e-01 90.4% 20.5%
3635012 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.65 48.0 3.75e-01 82.7% 50.0%
3969065 4168.1.1.1 alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP 0.64 53.0 5.26e-01 92.3% 87.3%
5081366 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.64 54.0 3.79e-01 94.2% 43.0%
4933282 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.64 46.0 3.39e-01 80.8% 64.5%
4545543 517.2.1.1 beta barrels › CBF-like › TraF › TraF › TrbI 0.63 45.0 3.07e-01 78.8% 24.1%
3945539 4168.1.1.1 alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP 0.62 52.0 5.01e-01 94.2% 81.7%
4045754 110.1.1.18 alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death_Lrrd1 0.62 42.0 3.33e-01 71.2% 88.6%
3270040 101.1.16.0 alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain 0.62 45.0 3.85e-01 76.9% 52.5%
4014485 5044.1.1.0 extended segments › PsbZ-like › PsbZ-like › PsbZ-like 0.62 50.0 4.00e-01 92.3% 47.4%
3387901 187.2.1.1 alpha arrays › alpha-helical ferredoxin-like › Hypothetical protein HPAG1_0444 helical domain › Hypothetical protein HPAG1_0444 helical domain › DUF5644 0.61 46.0 3.70e-01 82.7% 53.3%
4266784 2004.1.1.455 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 0.61 54.0 3.00e-01 98.1% 9.5%
5074940 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.61 50.0 4.94e-01 92.3% 89.1%
4430787 141.1.1.4 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C 0.60 52.0 3.20e-01 100.0% 17.9%
5024245 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.57 44.0 3.54e-01 86.5% 64.5%
3935681 3664.1.1.0 alpha arrays › Small, acid-soluble spore protein C › Small, acid-soluble spore protein C › Small, acid-soluble spore protein C 0.57 39.0 4.06e-01 73.1% 82.0%
4025912 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 48.0 3.35e-01 98.1% 35.4%