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UXF50037.1

Arc-Vir

MT764214__UXF50037.1__7865G3B6-14__00014

Identity

Accession:
MT764214 ↗
Protein ID:
UXF50037.1 ↗
Kingdom:
archaea

Quality

80.2 mean pLDDT

Taxonomy

Haloquadratum_phage_sp.

TaxID: 2768784

Cluster

View cluster (31 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-80
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bwiB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.62 47.0 3.63e-01 83.7% 82.8%
4gw9A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.61 47.0 3.49e-01 83.7% 76.3%
7lscA01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.60 47.0 3.89e-01 85.0% 98.0%
5l09B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.60 47.0 3.85e-01 88.7% 95.7%
3k2nA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.60 45.0 3.52e-01 81.2% 81.4%
1vccA00 3.30.66.10 Alpha Beta › 2-Layer Sandwich › Viral Topoisomerase I › DNA topoisomerase I domain 0.59 37.0 3.84e-01 82.5% 66.2%
2f4qA01 3.30.66.10 Alpha Beta › 2-Layer Sandwich › Viral Topoisomerase I › DNA topoisomerase I domain 0.59 35.0 3.69e-01 80.0% 65.3%
3lhxA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 43.0 2.98e-01 80.0% 89.7%
1l3lA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 40.0 3.27e-01 81.2% 82.9%
2it1A02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 29.0 3.16e-01 76.2% 65.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4951095 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.66 51.0 4.03e-01 83.7% 82.4%
4623391 223.1.1.7 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.61 47.0 3.79e-01 86.3% 93.5%
2042103 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.59 45.0 3.48e-01 83.7% 83.7%
5050153 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 44.0 3.49e-01 82.5% 84.7%
4034453 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 45.0 3.72e-01 88.7% 68.8%
4586436 223.1.1.7 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.57 47.0 3.73e-01 95.0% 88.9%
5073995 304.131.1.0 ↗ a+b two layers › Alpha-beta plaits › Phosphonoacetate hydrolase insertion domain › Phosphonoacetate hydrolase insertion domain 0.53 37.0 3.43e-01 72.5% 56.2%
3729058 5.1.4.119 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C 0.52 44.0 2.83e-01 93.8% 51.2%
3503728 5.1.10.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RAB3GAP2_N 0.52 43.0 3.66e-01 97.5% 60.0%
3981692 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 41.0 2.85e-01 90.0% 94.8%
D2 medium residues 81-183
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.60 31.0 3.21e-01 92.2% 53.1%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.56 33.0 2.97e-01 100.0% 41.7%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 31.0 3.31e-01 88.3% 62.4%
1konA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.54 28.0 3.28e-01 90.3% 69.3%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 31.0 3.36e-01 88.3% 66.7%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.54 31.0 3.07e-01 99.0% 53.2%
2re1A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 28.0 3.20e-01 89.3% 67.6%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 34.0 3.40e-01 88.3% 63.8%
1r1tA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 31.0 3.20e-01 89.3% 62.2%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 30.0 3.07e-01 89.3% 57.4%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 32.0 3.34e-01 88.3% 67.7%
1pz4A00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.51 32.0 3.14e-01 97.1% 55.8%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 30.0 3.31e-01 90.3% 71.4%
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 28.0 3.04e-01 85.4% 63.2%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 31.0 3.27e-01 91.3% 68.9%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3909399 233.1.1.0 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.68 28.0 3.17e-01 91.3% 48.8%
1349783 3347.1.1.1 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 0.60 31.0 3.21e-01 92.2% 53.1%
4994983 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 31.0 3.70e-01 85.4% 75.7%
5055001 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 35.0 3.95e-01 98.1% 78.8%
3470093 3696.1.1.1 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.57 29.0 3.43e-01 90.3% 72.3%
4994595 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 33.0 3.08e-01 95.1% 44.4%
3279731 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.55 33.0 3.41e-01 89.3% 63.2%
4115704 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 30.0 3.38e-01 98.1% 76.0%
2979129 919.1.1.1 ↗ few secondary structure elements › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal_L36 0.52 21.0 2.99e-01 86.4% 80.4%
5007363 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.50 34.0 3.18e-01 96.1% 53.3%