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UXF50958.1

Arc-Vir

MT764233__UXF50958.1__HQRvContig03-46__00046

Identity

Accession:
MT764233 ↗
Protein ID:
UXF50958.1 ↗
Kingdom:
archaea

Quality

72.5 mean pLDDT

Taxonomy

Haloquadratum_phage_sp.

TaxID: 2768784

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-61
PDB
Domain cluster: rep: IMGVR_UViG_2554235495_000004-2554235495-2556165267__D8-59
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hqz800 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.76 59.0 4.31e-01 96.0% 32.6%
2ww4A02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.74 65.0 4.94e-01 100.0% 91.6%
1uekA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.73 63.0 4.82e-01 100.0% 99.2%
5abxA00 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.70 59.0 4.14e-01 100.0% 51.4%
5ynrA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.69 59.0 4.30e-01 98.0% 42.8%
2cfxA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.69 59.0 4.96e-01 100.0% 85.6%
2bopA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.68 56.0 4.82e-01 96.0% 97.6%
2qz8A02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.68 57.0 4.91e-01 96.0% 96.3%
2cyyA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.67 56.0 4.70e-01 100.0% 85.3%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.67 58.0 4.32e-01 96.0% 74.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 55.0 3.92e-01 100.0% 49.1%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.65 52.0 4.53e-01 92.0% 90.2%
2qg3A00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.65 55.0 3.73e-01 100.0% 26.3%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.64 51.0 3.90e-01 90.0% 73.0%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 52.0 3.90e-01 98.0% 50.7%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.63 53.0 3.98e-01 98.0% 39.7%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.63 52.0 4.13e-01 100.0% 50.4%
1tljB00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.63 53.0 3.64e-01 100.0% 27.7%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 51.0 4.51e-01 100.0% 98.8%
2qmwA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 49.0 4.37e-01 92.0% 100.0%
1f0xA01 3.30.70.610 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › D-lactate dehydrogenase, cap domain, subdomain 1 0.63 51.0 4.22e-01 98.0% 88.0%
1zbuB01 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.62 43.0 3.81e-01 84.0% 50.0%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.62 51.0 4.81e-01 98.0% 85.7%
4p78A00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 52.0 4.47e-01 100.0% 97.7%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 47.0 4.19e-01 90.0% 93.8%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 49.0 4.29e-01 98.0% 96.4%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 47.0 4.25e-01 96.0% 100.0%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 47.0 4.20e-01 94.0% 98.8%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.60 49.0 3.70e-01 100.0% 33.8%
3o1lB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 47.0 4.17e-01 100.0% 94.3%
2x41A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 3.79e-01 100.0% 57.1%
2hfqA00 3.10.510.10 Alpha Beta › Roll › NE1680-like fold › NE1680-like 0.58 45.0 4.06e-01 100.0% 69.4%
3nrbB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 46.0 4.10e-01 100.0% 97.6%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 44.0 4.03e-01 100.0% 100.0%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 44.0 3.93e-01 100.0% 97.6%
2kdoA03 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 4.01e-01 100.0% 87.5%
1fxrA00 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.77e-01 90.0% 98.4%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.53 40.0 3.05e-01 98.0% 31.1%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.50 37.0 3.10e-01 86.0% 50.0%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971048 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.86 72.0 6.35e-01 90.0% 100.0%
3164039 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.84 74.0 6.44e-01 96.0% 95.9%
3965635 304.14.1.0 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.83 71.0 6.41e-01 92.0% 98.5%
3972612 308.1.1.0 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.81 73.0 5.85e-01 100.0% 83.2%
4048407 304.14.1.0 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.79 70.0 6.00e-01 100.0% 97.5%
4643549 308.1.1.0 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.77 63.0 5.55e-01 92.0% 97.3%
3250014 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.76 59.0 4.16e-01 82.0% 50.7%
3976762 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.75 64.0 5.62e-01 96.0% 98.7%
3937831 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.73 53.0 4.52e-01 100.0% 47.1%
4985395 304.4.1.75 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › GYD 0.71 59.0 5.20e-01 94.0% 100.0%
4965210 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.71 61.0 5.78e-01 100.0% 98.3%
4029970 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.70 59.0 5.18e-01 100.0% 98.8%
3972123 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.70 59.0 4.77e-01 100.0% 75.2%
5067536 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.70 58.0 4.86e-01 96.0% 92.2%
3930205 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 51.0 4.31e-01 100.0% 45.6%
4091138 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.69 59.0 4.96e-01 100.0% 87.8%
3381288 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.69 58.0 4.99e-01 100.0% 92.9%
4951859 3110.1.1.3 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › AglB_core-like 0.68 58.0 3.65e-01 98.0% 22.9%
3465504 4076.1.1.0 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.68 51.0 5.11e-01 100.0% 84.0%
4648413 304.4.1.20 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 0.68 57.0 4.66e-01 100.0% 79.0%
3665387 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.67 56.0 4.44e-01 98.0% 45.7%
3458900 4076.1.1.2 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI 0.67 49.0 4.87e-01 100.0% 76.4%
4578112 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.66 57.0 4.76e-01 100.0% 86.7%
4964447 304.4.1.20 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 0.66 55.0 4.78e-01 100.0% 94.1%
4018427 10.9.1.0 ↗ beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin 0.66 57.0 4.69e-01 100.0% 71.6%
4940257 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 53.0 4.79e-01 92.0% 100.0%
3583059 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 58.0 4.17e-01 100.0% 37.2%
4964337 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.66 55.0 5.37e-01 98.0% 94.5%
3589327 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.66 56.0 4.88e-01 100.0% 97.5%
4029036 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 55.0 4.64e-01 100.0% 73.3%
164972 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.65 55.0 3.73e-01 100.0% 26.2%
3934897 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 50.0 4.20e-01 100.0% 48.9%
3941052 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 51.0 4.31e-01 100.0% 53.3%
4349801 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.61 50.0 3.75e-01 92.0% 69.5%
1291966 304.7.1.5 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › SUB1_ProdP9 0.61 47.0 4.19e-01 90.0% 93.8%
5019731 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.61 49.0 3.09e-01 100.0% 15.3%
3617550 4342.1.1.0 ↗ alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like 0.60 52.0 3.47e-01 100.0% 31.0%
None — 0.60 52.0 3.98e-01 100.0% 53.3%
3509447 10.32.1.223 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_ELAPOR1 0.60 51.0 3.64e-01 100.0% 31.5%
4962335 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.60 49.0 4.64e-01 98.0% 81.5%
4031329 4342.1.1.1 ↗ alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region 0.59 51.0 3.38e-01 100.0% 26.7%
4220646 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.59 47.0 3.96e-01 100.0% 72.0%
4433786 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.57 46.0 4.06e-01 100.0% 62.4%
3604174 304.8.1.96 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26798 0.57 45.0 4.01e-01 98.0% 92.9%
3988500 4342.1.1.1 ↗ alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region 0.57 49.0 3.37e-01 100.0% 29.5%
3730657 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 49.0 3.44e-01 100.0% 33.5%
3236610 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.18e-01 100.0% 61.0%
3287243 304.164.1.1 ↗ a+b two layers › Alpha-beta plaits › Hypothetical protein NegoA.19184.a C-terminal domain › Hypothetical protein NegoA.19184.a C-terminal domain › DUF4265 0.57 45.0 4.03e-01 92.0% 97.3%
3488745 11.1.1.805 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 0.56 46.0 3.74e-01 100.0% 60.9%
139586 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 44.0 3.94e-01 100.0% 98.8%
3399432 382.1.1.14 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF753 0.55 40.0 3.47e-01 80.0% 65.0%
3312666 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 45.0 4.12e-01 100.0% 75.7%
4974520 205.1.1.19 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_13 0.54 42.0 4.04e-01 96.0% 100.0%
3415245 4342.1.1.1 ↗ alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region 0.54 46.0 3.12e-01 100.0% 24.5%
3720983 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 46.0 3.11e-01 100.0% 40.7%
3594780 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 45.0 3.22e-01 100.0% 57.4%
3789312 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 40.0 2.98e-01 88.0% 64.4%
4289847 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.50 44.0 3.57e-01 100.0% 67.4%