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MT764845.1__QNN99808.1__P67b_00049__00049

Bact-Vir

MT764845.1__QNN99808.1__P67b_00049__00049

Identity

Accession:
MT764845 ↗
Kingdom:
phage

Quality

85.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ruegeria_phage_Tedan

TaxID: 2759200

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-99
PDB
Domain cluster: rep: KY499642.1__AQT28023.1__pVa21_082__00082__D3-66
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.81 67.0 6.67e-01 87.7% 90.8%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 52.0 5.93e-01 76.7% 98.1%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 59.0 5.29e-01 98.6% 62.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.72 52.0 5.13e-01 87.7% 72.7%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.71 55.0 5.50e-01 82.2% 95.9%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.71 54.0 5.33e-01 82.2% 92.4%
1jqpA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.71 61.0 4.26e-01 94.5% 95.6%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 5.21e-01 79.5% 83.1%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 54.0 4.42e-01 84.9% 49.6%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.68e-01 93.2% 100.0%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.68 61.0 5.43e-01 100.0% 83.3%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.67 55.0 5.20e-01 90.4% 92.2%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.67 54.0 4.81e-01 87.7% 75.0%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 4.14e-01 86.3% 43.7%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 5.19e-01 86.3% 90.4%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.65 51.0 5.07e-01 91.8% 83.1%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 5.46e-01 89.0% 100.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.65e-01 86.3% 86.2%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 53.0 4.32e-01 95.9% 94.3%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.97e-01 87.7% 88.0%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.60 48.0 4.25e-01 90.4% 59.6%
3oqcA02 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.59 51.0 3.70e-01 97.3% 87.7%
1wzvA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.58 47.0 3.88e-01 95.9% 100.0%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 46.0 3.06e-01 91.8% 52.9%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 44.0 3.74e-01 84.9% 80.5%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 45.0 4.08e-01 86.3% 65.0%
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 44.0 4.14e-01 86.3% 69.7%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 43.0 3.01e-01 89.0% 49.4%
3e1yE01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 43.0 4.13e-01 86.3% 72.1%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 4.16e-01 94.5% 83.5%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 3.60e-01 91.8% 67.7%
1jc4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 36.0 2.89e-01 75.3% 34.5%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 45.0 2.97e-01 100.0% 46.2%
5h7jA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 41.0 3.62e-01 86.3% 75.0%
2jwyA01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.52 39.0 3.35e-01 86.3% 93.3%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.89e-01 90.4% 87.4%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.51 41.0 3.89e-01 91.8% 93.3%
3fbqA02 2.60.40.1640 Mainly Beta › Sandwich › Immunoglobulin-like › Conserved domain protein. 0.50 42.0 3.49e-01 95.9% 97.1%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 35.0 2.58e-01 75.3% 61.8%
2bi0A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 39.0 3.20e-01 87.7% 87.8%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3987601 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 58.0 6.95e-01 74.0% 100.0%
331968 4.1.1.55 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1653 0.81 68.0 6.63e-01 87.7% 91.0%
4519674 4.1.1.186 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5397 0.75 55.0 5.97e-01 83.6% 96.6%
1567496 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 53.0 5.88e-01 82.2% 98.2%
4123449 4.8.1.35 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.73 50.0 4.79e-01 71.2% 72.9%
3277860 4.1.1.368 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3097_N 0.73 51.0 5.35e-01 83.6% 81.5%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 54.0 5.81e-01 97.3% 96.7%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 49.0 4.49e-01 84.9% 53.7%
2527304 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.72 54.0 5.84e-01 86.3% 96.7%
3617741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 4.32e-01 91.8% 57.1%
4029263 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.71 57.0 4.82e-01 87.7% 64.2%
4013406 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 53.0 5.27e-01 79.5% 97.3%
3803520 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 57.0 4.83e-01 87.7% 78.3%
3705335 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.71 60.0 4.07e-01 93.2% 87.7%
4012945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.48e-01 83.6% 94.7%
4615629 4.1.1.449 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1292 0.70 51.0 4.83e-01 76.7% 76.5%
3470175 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.68 53.0 5.18e-01 83.6% 90.0%
3867207 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.68 57.0 5.24e-01 91.8% 72.6%
3886139 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 52.0 5.42e-01 83.6% 92.3%
572 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.67 54.0 4.81e-01 87.7% 75.0%
3607742 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 54.0 4.03e-01 89.0% 41.6%
1175108 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.66 53.0 4.57e-01 86.3% 65.2%
3721062 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.66 54.0 5.13e-01 89.0% 88.2%
3593976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 57.0 4.72e-01 95.9% 63.1%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.66 55.0 5.10e-01 91.8% 73.3%
3732571 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 48.0 5.25e-01 79.5% 100.0%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.65 54.0 5.48e-01 98.6% 97.1%
3213653 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 48.0 4.68e-01 78.1% 95.0%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.64 50.0 4.85e-01 84.9% 81.2%
3272197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.48e-01 87.7% 70.5%
591 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.62 50.0 4.94e-01 87.7% 88.2%
3600338 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 5.17e-01 95.9% 98.8%
3720660 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.86e-01 87.7% 89.3%
3800985 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 52.0 3.75e-01 95.9% 88.1%
3999634 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.60 46.0 4.42e-01 83.6% 98.8%
4931113 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 48.0 4.24e-01 90.4% 61.8%
3546727 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 52.0 4.57e-01 95.9% 74.1%
3547225 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 48.0 2.96e-01 90.4% 18.0%
1156223 219.1.1.41 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C78 0.59 51.0 3.59e-01 97.3% 79.1%
4941831 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 47.0 3.98e-01 90.4% 68.5%
3394333 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 43.0 3.71e-01 83.6% 95.4%
3713683 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.58 41.0 3.56e-01 75.3% 48.7%
5075528 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.57 42.0 3.97e-01 79.5% 64.4%
3709987 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.57 47.0 4.06e-01 97.3% 88.5%
None — 0.56 40.0 2.70e-01 76.7% 29.7%
3469353 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 47.0 3.08e-01 95.9% 46.5%
3693921 109.4.1.681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.55 43.0 2.68e-01 86.3% 75.3%
3718433 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.55 46.0 3.46e-01 95.9% 56.9%
3873576 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.54 40.0 3.61e-01 79.5% 81.9%
4016930 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.54 39.0 3.12e-01 79.5% 35.8%
4030821 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.54 43.0 4.04e-01 91.8% 82.1%
3424666 5.1.3.25 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.54 44.0 3.02e-01 95.9% 70.8%
3593024 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.53 39.0 3.45e-01 82.2% 70.4%
3257765 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.52 42.0 3.24e-01 89.0% 68.8%
3732787 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 45.0 2.89e-01 95.9% 25.4%
3492822 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 37.0 2.47e-01 76.7% 29.6%
3433553 5.1.3.54 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.51 41.0 2.67e-01 90.4% 44.1%
4028603 5.1.4.402 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30552 0.51 40.0 2.58e-01 90.4% 23.5%
3733913 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 40.0 2.82e-01 89.0% 39.4%
3738504 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.50 40.0 3.58e-01 90.4% 75.5%
3185511 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.50 41.0 3.65e-01 95.9% 74.3%