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MT770738.1__QNG62700.1__B1VFA_019__00018

Bact-Vir

MT770738.1__QNG62700.1__B1VFA_019__00018

Identity

Accession:
MT770738 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_B1VFA

TaxID: 2759201

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-57
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bf3A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.70 50.0 3.27e-01 78.4% 44.6%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.68 46.0 4.62e-01 70.6% 88.5%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 53.0 4.33e-01 92.2% 70.1%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.65 44.0 3.60e-01 72.5% 91.1%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 51.0 4.11e-01 92.2% 68.3%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 49.0 4.17e-01 90.2% 85.2%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 42.0 3.27e-01 76.5% 78.8%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 46.0 4.50e-01 98.0% 78.6%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 41.0 3.91e-01 90.2% 57.8%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 4.21e-01 100.0% 72.6%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 46.0 3.50e-01 90.2% 60.6%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 47.0 3.31e-01 92.2% 63.3%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 48.0 3.78e-01 100.0% 80.3%
1mg2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 41.0 2.53e-01 90.2% 10.5%
1je0C00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.59 50.0 3.27e-01 96.1% 84.6%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.59 36.0 2.11e-01 78.4% 6.7%
4xq7A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 39.0 2.87e-01 70.6% 73.1%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 47.0 3.68e-01 100.0% 81.5%
2jz4A01 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.58 41.0 3.10e-01 78.4% 85.1%
5mx4A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.58 49.0 3.15e-01 94.1% 85.0%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 44.0 3.33e-01 90.2% 58.4%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 3.73e-01 94.1% 99.0%
1mk1A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 45.0 3.13e-01 90.2% 94.7%
3u40D00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.57 49.0 3.14e-01 96.1% 82.6%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 45.0 4.08e-01 92.2% 78.7%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 45.0 2.96e-01 92.2% 89.6%
2bn4B03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 46.0 3.36e-01 96.1% 58.2%
1stzA03 3.30.390.60 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Heat-inducible transcription repressor hrca homolog; domain 3 0.57 45.0 3.89e-01 94.1% 94.4%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 46.0 3.73e-01 98.0% 76.6%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.56 48.0 2.83e-01 98.0% 25.8%
4fnvA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 41.0 2.73e-01 88.2% 77.0%
4mchA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.55 46.0 3.01e-01 96.1% 82.3%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 46.0 4.44e-01 100.0% 93.4%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 3.88e-01 78.4% 75.4%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 40.0 3.58e-01 82.4% 55.0%
3bpnC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.69e-01 94.1% 88.2%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 4.15e-01 100.0% 96.9%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 44.0 3.25e-01 94.1% 69.7%
3ceaC02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 44.0 3.09e-01 100.0% 68.1%
6hyfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.54e-01 96.1% 80.2%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 40.0 3.04e-01 88.2% 35.8%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.44e-01 94.1% 87.5%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.60e-01 100.0% 92.1%
3qt2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.43e-01 94.1% 85.6%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 38.0 2.97e-01 88.2% 64.3%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
9225 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.71 51.0 3.57e-01 78.4% 23.7%
3931704 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.69 59.0 4.66e-01 100.0% 60.9%
3425088 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 45.0 4.18e-01 70.6% 73.8%
3784764 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.66 50.0 3.04e-01 90.2% 12.0%
3231719 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 53.0 4.45e-01 92.2% 64.4%
3937854 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 53.0 4.31e-01 92.2% 71.0%
3374974 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.65 50.0 3.28e-01 92.2% 19.6%
4379563 375.1.1.289 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.64 43.0 4.45e-01 70.6% 95.6%
4144799 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.63 52.0 4.82e-01 98.0% 95.7%
3224924 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 46.0 3.45e-01 100.0% 31.9%
4278807 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.61 49.0 3.90e-01 92.2% 87.3%
4379144 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.60 47.0 3.99e-01 92.2% 98.9%
4946434 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.60 49.0 3.79e-01 98.0% 100.0%
3512462 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.60 48.0 3.71e-01 92.2% 63.3%
4390303 5.1.3.238 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.59 46.0 2.62e-01 90.2% 7.6%
4303869 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.59 47.0 4.04e-01 94.1% 92.2%
4038272 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.59 48.0 4.02e-01 96.1% 100.0%
4193896 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.59 47.0 3.91e-01 92.2% 98.9%
3869486 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.58 46.0 2.79e-01 92.2% 14.6%
5079725 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 47.0 4.50e-01 92.2% 90.0%
3788481 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 46.0 2.75e-01 90.2% 13.7%
4065841 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.58 46.0 3.96e-01 96.1% 96.8%
3797523 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 48.0 3.66e-01 98.0% 45.4%
4405947 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.58 47.0 3.90e-01 96.1% 95.0%
4087673 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.57 46.0 3.88e-01 96.1% 94.0%
3713027 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.57 45.0 3.56e-01 94.1% 76.0%
5850 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.57 45.0 3.87e-01 94.1% 93.3%
3405797 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.56 44.0 3.75e-01 92.2% 97.9%
3549045 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 47.0 3.78e-01 100.0% 53.6%
4418351 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 47.0 3.84e-01 100.0% 73.3%
3933561 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 43.0 3.47e-01 86.3% 45.7%
3170809 60.2.1.1 ↗ beta barrels › SPOC domain-like › Sld3 N-terminal domain › Sld3 N-terminal domain › Sld3_N 0.56 39.0 3.11e-01 76.5% 53.9%
4945895 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 47.0 3.81e-01 100.0% 89.5%
3479661 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 46.0 3.69e-01 98.0% 51.8%
3889621 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.55 42.0 4.04e-01 100.0% 75.0%
3836037 76.1.1.2 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin 0.55 45.0 3.46e-01 100.0% 97.1%
3721757 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 41.0 3.89e-01 86.3% 98.5%
5076734 2004.1.1.164 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.54 44.0 3.06e-01 92.2% 70.0%
3510894 844.1.1.1 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub 0.54 45.0 3.03e-01 100.0% 89.6%
4614038 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.54 45.0 3.44e-01 100.0% 73.7%
1387073 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.53 35.0 3.03e-01 70.6% 45.1%
5028212 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.53 42.0 3.12e-01 94.1% 64.2%
5061371 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.53 41.0 2.69e-01 94.1% 82.8%
3370517 109.1.1.6 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 0.53 39.0 2.86e-01 92.2% 26.9%
3964837 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.52 41.0 3.72e-01 94.1% 62.7%
3269549 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.21e-01 100.0% 61.9%
3244960 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 40.0 3.63e-01 86.3% 72.0%
4027011 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 39.0 2.55e-01 92.2% 54.1%
3166076 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.52 34.0 2.27e-01 70.6% 16.1%